@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0607: (2016-03-17 )
MKRLKPYWLSITAVLVLTFGQVIGQLYLPTLMSNIIDKGVVTGDTDYIWSTGMKMLLISFASVILSVIVVYLASRISMGFGKELRDKIFTKVEDFSLQEFDKVGTSSLITRTTNDVVQIQNVLYMMMRLMVMAPIMLLGGIIMAVGRDAKLSLIFVVVLPLLLLLVVILGGKAMPMFKSLQKKMDKLNRVIREGLTGIRVVRSFNRNEDELEKFEEANADYATTAIKVNRLLSLMSPLMMLLMNLTSIAIVWIGSIFIGNGDMQVGDLMAFIQYAMQIMMSFMMLSAVFIMIPRAGASAERINEVLDMNAEILNPENPKTSTPPAKLSFEHVTFRYEGAEKPVIEDITFEANAGETIAIIGSTGAGKSTLINMIPRFYDVESGVVKINGIDVREMDQSSLRQKIGLVPQKAVLFTGTIASNMRYGKEDATDEEIWEALRTAQAENFVSKLANGLGSRVEQGGNNFSGGQKQRLSIARSLIRKPEIYIFDDSFSALDFKTDAKLREALKAETTEAVTLIVAQRITSVVNSDQIIVMNEGKIAGMGTHEELKESNQIYQEIMRSQLSEEEIA

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ANP_A_3(4Q4A)
?
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ANP_A_3(3QF4)
?
[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




3 PsiBlast_PDB 93.5942%-117 - C2 -4Q4H - ? -
4 PsiBlast_PDB 92.9442%-116 - C2 -4Q4J - ? -
1 PsiBlast_PDB 92.5442%-121 - C2 -3QF4 6.4 ?
2 PsiBlast_PDB 91.6742%-121 - C2 -4Q4A 5.9 ?
5 PsiBlast_PDB 82.7029%-110 - C2 -2HYD 4.7 Y1866_STAAM
6 PsiBlast_PDB 81.8629%-111 - C2 -2ONJ - Y1866_STAAM -
21 PsiBlast_CBE 81.1632%-116 - C2 -4Q4A - Y288_THEMA -
22 PsiBlast_CBE 80.4632%-112 - C2 -3QF4 - Y288_THEMA -
78 HHSearch 79.2527%-108 - C2 -3WMG - ? -
96 Fugue 77.2526% -99 - C2 -3B60 - MSBA_SALTY -
76 HHSearch 76.5426% -98 - C2 -3B60 - MSBA_SALTY -
77 HHSearch 75.1627%-103 - C2 -3ZDQ - ABCBA_HUMAN -
12 PsiBlast_PDB 75.1628% -95 - C2 -3B60 - MSBA_SALTY -
17 PsiBlast_PDB 73.3428%-112 - C2 -4AYW - ABCBA_HUMAN -
15 PsiBlast_PDB 72.0828%-106 - C2 -4AYX - ABCBA_HUMAN -
16 PsiBlast_PDB 71.0028%-105 - C2 -3ZDQ - ABCBA_HUMAN -
14 PsiBlast_PDB 70.8228%-106 - C2 -4AYT - ABCBA_HUMAN -
18 PsiBlast_PDB 70.4027%-109 - C2 -4F4C - PGP1_CAEEL -
99 Fugue 70.0224%-111 - C2 -4F4C - PGP1_CAEEL -
20 PsiBlast_PDB 69.7828%-106 - C2 -4MYH - ATM1_YEAST -
52 PsiBlast_CBE 62.6935% -94 - C2 -1XEF 6.7 HLYBP_ECOLX
53 PsiBlast_CBE 62.1535% -90 - C2 -1XEF 6.6 HLYBP_ECOLX
49 PsiBlast_CBE 61.9735% -88 - C2 -2FGJ 6.4 HLYBP_ECOLX
43 PsiBlast_CBE 61.9435% -92 - C2 -2FGK 6.7 HLYBP_ECOLX
46 PsiBlast_CBE 61.6435% -91 - C2 -2FGJ 6.2
41 PsiBlast_CBE 61.5035% -92 - C2 -2FGK 6.8
54 PsiBlast_CBE 61.4935% -89 - C2 -1XEF 6.1 HLYBP_ECOLX
39 PsiBlast_CBE 60.8335% -89 - C2 -2PMK 7.2
44 PsiBlast_CBE 60.8035% -91 - C2 -2FGK 6.9 HLYBP_ECOLX
48 PsiBlast_CBE 60.6935% -88 - C2 -2FGJ 6.8 HLYBP_ECOLX
47 PsiBlast_CBE 60.5935% -87 - C2 -2FGJ 6.5 HLYBP_ECOLX
42 PsiBlast_CBE 60.5835% -90 - C2 -2FGK 6.2 HLYBP_ECOLX
51 PsiBlast_CBE 59.8835% -88 - C2 -1XEF 6.5
61 PsiBlast_CBE 53.4631% -66 - C2 -4MKI 2.1 ECFA2_CALS4
62 PsiBlast_CBE 53.1731% -65 - C2 -4MKI 2.0 ECFA2_CALS4
66 PsiBlast_CBE 47.6633% -61 - C2 -4YMU 4.9 ?
65 PsiBlast_CBE 46.6333% -59 - C2 -4YMU 5.3 ?
63 PsiBlast_CBE 45.6833% -62 - C2 -4YMV 4.1 ?
64 PsiBlast_CBE 45.6233% -59 - C2 -4YMV 4.1 ?