@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0611: (2016-03-17 )
MTNVLFIKANGLPAERSVSVALYEIFLTEYKKSHPDDNVTELDLFEADLPYYDVTMMSGLHKEAAGETLSPEEKRLADIANSYLDQFLAADKIVMAFPLWNFSIPAQFLTYLFYLNQAGKTFKYTANGPVGLVADKKIALLNARGGIYSDGPMQSFEMSLNYVKNVLAHFGISEPEMVIVEGHNAKPDQAKDIISAGAKEAVELAKIF

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FMN_A_3(3W77)
?
[Raw transfer]




FMN_B_4(3W77)
?
[Raw transfer]




FMN_C_9(3W79)
?
[Raw transfer]




FMN_A_5(3W7A)
?
[Raw transfer]




FMN_B_10(3W7A)
?
[Raw transfer]




FMN_B_7(3W79)
?
[Raw transfer]




FMN_A_5(3W7A)
?
[Raw transfer]




FMN_A_5(3W79)
?
[Raw transfer]




FMN_D_19(3W7A)
?
[Raw transfer]




FMN_C_12(3W7A)
?
[Raw transfer]




FMN_D_11(3W79)
?
[Raw transfer]




CBD_A_6(3W78)
?
[Raw transfer]




CBD_D_8(3W78)
?
[Raw transfer]




CBD_B_10(3W78)
?
[Raw transfer]




FMN_A_3(4M0C)
AZOR1_BACAN
[Raw transfer]




GOL_A_3(3P0R)
?
[Raw transfer]




GOL_A_7(3U7I)
AZOR1_BACAN
[Raw transfer]




CBD_C_12(3W78)
?
[Raw transfer]




PEG_A_4(3P0R)
?
[Raw transfer]




2 PsiBlast_PDB 97.4454%-117 - C2 -3P0R 2.7 ?
21 PsiBlast_CBE 97.3955%-120 - C2 -3W77 7.9 ?
1 PsiBlast_PDB 97.3855%-121 - C2 -3W77 - ? -
45 HHSearch 95.9054%-132 - C2 -3W77 7.4 ?
26 PsiBlast_CBE 89.1141%-111 - C2 -3W79 7.9 ?
28 PsiBlast_CBE 88.7241%-111 - C2 -3W78 5.2 ?
23 PsiBlast_CBE 88.3741%-112 - C2 -3W7A 8.4 ?
4 PsiBlast_PDB 88.3341%-108 - C2 -3W79 7.8 ?
25 PsiBlast_CBE 87.6241%-108 - C2 -3W79 8.0 ?
44 HHSearch 87.4941%-113 - C2 -3W7A 8.5 ?
22 PsiBlast_CBE 87.4741%-110 - C2 -3W7A 8.2 ?
5 PsiBlast_PDB 87.3941%-110 - C2 -3W7A 8.5 ?
3 PsiBlast_PDB 87.2541%-109 - C2 -3W78 4.9 ?
27 PsiBlast_CBE 87.2341%-109 - C2 -3W79 8.1 ?
29 PsiBlast_CBE 86.8841%-114 - C2 -3W78 5.9 ?
30 PsiBlast_CBE 86.7341%-108 - C2 -3W78 6.7 ?
24 PsiBlast_CBE 86.2541%-104 - C2 -3W7A 8.4 ?
6 PsiBlast_PDB 80.6533%-108 - C2 -2HPV - AZOR_ENTFA -
43 HHSearch 80.0434%-110 - C2 -2HPV - AZOR_ENTFA -
9 PsiBlast_PDB 78.9932%-117 - C2 -2D5I - AZOR_ECOLI -
17 PsiBlast_PDB 69.6331%-111 - C2 -4M0C 7.9 AZOR1_BACAN
16 PsiBlast_PDB 68.9231%-111 - C2 -3U7I 2.2 AZOR1_BACAN