@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0613: (2016-03-17 )
MKAVVIENYGGKEELKEKEVAMPKAGKNQVIVKEAATSINPIDWKLREGYLKQMMDWEFPIILGWDVAGVISEVGEGVTDWKVGDEVFARPETTRFGTYAEYTAVDDHLLAPLPEGISFDEAASIPLAGLTAWQALFDHAKLQKGEKVLIHAGAGGVGTLAIQLAKHAGAEVITTASAKNHELLKSLGADQVIDYKEVNFKDVLSDIDVVFDTMGGQIETDSYDVLKEGTGRLVSIVGISNEDRAKEKNVTATGIWLQPNGEQLKELGKLLANKTIKPIVGATFPFSEKGVFDAHALSETHHAVGKIVISFNK

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_A_2(4IDB)
ENOXC_FRAAN
[Raw transfer]



NDP_A_2(4IDF)
ENOXC_FRAAN
[Raw transfer]



NDP_A_2(4IDC)
ENOXC_FRAAN
[Raw transfer]



NDP_A_2(3TQH)
?
[Raw transfer]



NDP_A_2(4IDD)
ENOXC_FRAAN
[Raw transfer]



NAP_A_2(4IDE)
ENOXC_FRAAN
[Raw transfer]



NDP_A_2(3TQH)
?
[Raw transfer]



4XX_A_3(4IDF)
ENOXC_FRAAN
[Raw transfer]



3XX_A_3(4IDE)
ENOXC_FRAAN
[Raw transfer]



2XX_A_3(4IDD)
ENOXC_FRAAN
[Raw transfer]



1XX_A_3(4IDC)
ENOXC_FRAAN
[Raw transfer]



NDP_D_8(4RVU)
?
[Raw transfer]



NDP_A_2(3JYN)
?
[Raw transfer]



NDP_B_6(4RVU)
?
[Raw transfer]



NDP_C_7(4RVU)
?
[Raw transfer]



NDP_A_5(4RVU)
?
[Raw transfer]



EDO_A_6(4IDB)
ENOXC_FRAAN
[Raw transfer]
100 HHSearch 95.6142% -85 - C1 -3TQH 10.2 ?
1 PsiBlast_PDB 94.4741% -84 - C1 -3TQH 10.4 ?
6 PsiBlast_PDB 91.7241% -80 - C1 -4IDE 8.4 ENOXC_FRAAN
3 PsiBlast_PDB 91.0041% -81 - C1 -4IDB 11.3 ENOXC_FRAAN
5 PsiBlast_PDB 90.8441% -81 - C1 -4IDD 9.1 ENOXC_FRAAN
7 PsiBlast_PDB 90.8341% -80 - C1 -4IDF 9.2 ENOXC_FRAAN
2 PsiBlast_PDB 90.0241% -86 - C1 -4IDA - ENOXC_FRAAN -
119 Fugue 90.0036% -80 - C1 -2VN8 - RT4I1_HUMAN -
4 PsiBlast_PDB 89.9341% -82 - C1 -4IDC 10.6 ENOXC_FRAAN
116 HHSearch 86.6929% -78 - C1 -3UOG - ? -
21 PsiBlast_CBE 86.6134% -81 - C1 -2VN8 - RT4I1_HUMAN -
8 PsiBlast_PDB 86.2134% -80 - C1 -2VN8 - RT4I1_HUMAN -
101 HHSearch 85.4433% -80 - C1 -2EIH - ? -
17 PsiBlast_PDB 84.2529% -83 - C1 -1WLY - CAA43_BURSP -
115 HHSearch 83.5234% -71 - C1 -3GAZ - ? -
109 HHSearch 82.1429% -83 - C1 -3QWB - QOR_YEAST -
117 HHSearch 81.9330% -84 - C1 -1WLY - CAA43_BURSP -
16 PsiBlast_PDB 81.0433% -66 - C1 -3GAZ - ? -
22 PsiBlast_CBE 79.9231% -70 - C1 -2EIH - ? -
11 PsiBlast_PDB 79.7531% -72 - C1 -2EIH - ? -
32 PsiBlast_CBE 58.2135% -83 - C1 -3JYN 6.7 ?
25 PsiBlast_CBE 55.9336% -74 - C1 -4RVU 4.6 ?
24 PsiBlast_CBE 55.6636% -73 - C1 -4RVU 4.5 ?
26 PsiBlast_CBE 54.2836% -69 - C1 -4RVU 4.6 ?
19 PsiBlast_PDB 53.9536% -68 - C1 -4RVU 5.0 ?