@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0662: (2016-03-17 )
MTIKKTLTIAGSDSSGGAGLQADLKTFEEYGTYGFSAITTIVTMDPDNNWAHGVTPIDAQLVREQLKTILSGGPVDAMKTGMLGSIEIIKATREAIDKYDLKNVVIDPVMVCKGEDELIQPENAEAIRDLLLPKATITTPNLFEAGQLSGLGKLTTLDDMKAAAKKIIELGAKYVVIKGGKALESDKAIDLLYDGKEFTIYEVEKISPSHNHGAGCTFAAAITAGLAKGLTVEEAVAKAKDFVTAAIKGGFALNEFIGPVWHGAYNKAENR

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_H_8(2I5B)
PDXK_BACSU
[Raw transfer]




ACP_D_16(4C5N)
?
[Raw transfer]




ACP_A_6(4C5N)
?
[Raw transfer]




ACP_B_8(4C5N)
?
[Raw transfer]




ADP_A_5(4C5K)
?
[Raw transfer]




ADP_D_17(4C5K)
?
[Raw transfer]




ACP_B_10(4C5M)
?
[Raw transfer]




ACP_C_15(4C5M)
?
[Raw transfer]




ADP_B_9(4C5K)
?
[Raw transfer]




ADP_C_13(4C5K)
?
[Raw transfer]




ACP_D_20(4C5M)
?
[Raw transfer]




ADP_G_7(2I5B)
PDXK_BACSU
[Raw transfer]




ACP_A_5(4C5M)
?
[Raw transfer]




ADP_I_9(2I5B)
PDXK_BACSU
[Raw transfer]




HMH_H_8(1JXI)
THID_SALTY
[Raw transfer]




UEG_A_5(4C5L)
?
[Raw transfer]




UEG_D_11(4C5L)
?
[Raw transfer]




UEG_C_10(4C5L)
?
[Raw transfer]




HMH_G_7(1JXI)
THID_SALTY
[Raw transfer]




25 PsiBlast_CBE 94.1558% -81 - C3 -4C5N 6.8 ?
3 PsiBlast_PDB 93.9058% -79 - C3 -4C5K 6.8 ?
26 PsiBlast_CBE 93.6258% -80 - C3 -4C5N 6.5 ?
32 PsiBlast_CBE 93.5558% -81 - C3 -4C5K 6.2 ?
6 PsiBlast_PDB 93.1558% -80 - C3 -4C5N 6.7 ?
5 PsiBlast_PDB 93.0758% -79 - C3 -4C5M 7.0 ?
33 PsiBlast_CBE 92.9258% -79 - C3 -4C5K 5.8 ?
30 PsiBlast_CBE 92.8758% -78 - C3 -4C5L 3.4 ?
28 PsiBlast_CBE 92.6658% -77 - C3 -4C5M 6.4 ?
2 PsiBlast_PDB 92.6558% -77 * C3 *4C5J - ? -
4 PsiBlast_PDB 92.6358% -78 - C3 -4C5L 2.3 ?
27 PsiBlast_CBE 92.5158% -80 - C3 -4C5M 6.5 ?
21 PsiBlast_CBE 92.4958% -85 - C3 -2I5B - PDXK_BACSU -
34 PsiBlast_CBE 92.4258% -78 - C3 -4C5K 5.9 ?
29 PsiBlast_CBE 92.3758% -78 - C3 -4C5M 6.6 ?
1 PsiBlast_PDB 92.2858% -86 - C3 -2I5B 7.6 PDXK_BACSU
37 PsiBlast_CBE 92.2558% -77 - C3 -4C5J - ? -
36 PsiBlast_CBE 92.2258% -79 - C3 -4C5J - ? -
22 PsiBlast_CBE 92.1258% -85 - C3 -2I5B 6.6 PDXK_BACSU
98 HHSearch 91.6558% -79 - C3 -2I5B - PDXK_BACSU -
23 PsiBlast_CBE 91.1358% -83 - C3 -2I5B 6.5 PDXK_BACSU
31 PsiBlast_CBE 90.5058% -76 - C3 -4C5L 2.7 ?
39 PsiBlast_CBE 77.4135% -77 - C3 -1JXI 3.3 THID_SALTY
9 PsiBlast_PDB 77.1035% -77 - C3 -1JXI 3.4 THID_SALTY