@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0664: (2016-03-17 )
MKTELEKMIAGEMYDPSDRELAHGRNRARKFCREINDAMDSESRASVLKRLFGGTKENVYVEPDFRVDYGSNIYVGENFYANFDCVILDVCEVHIGDNCMMAPGVHIYTATHPLDPVERNSGLELGKPVEIGDNVWIGGRAIINPGVKLGNNVVVASGAVVTKSFPDNVVVAGNPARVIKTIEVEEK

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

COA_B_9(3V4E)
ATRF2_STAAC
[Raw transfer]




COA_A_6(3V4E)
ATRF2_STAAC
[Raw transfer]




COA_B_8(3V4E)
ATRF2_STAAC
[Raw transfer]




GOL_E_12(4EGG)
ATRF2_STAAC
[Raw transfer]




GOL_A_6(3SRT)
?
[Raw transfer]




GOL_A_6(3SRT)
?
[Raw transfer]




GOL_F_14(4EGG)
ATRF2_STAAC
[Raw transfer]




GOL_A_9(4EGG)
ATRF2_STAAC
[Raw transfer]




GOL_C_10(4EGG)
ATRF2_STAAC
[Raw transfer]




GOL_A_7(3HJJ)
?
[Raw transfer]




GOL_A_8(4EGG)
ATRF2_STAAC
[Raw transfer]




EDO_A_12(2WLG)
OATWY_NEIME
[Raw transfer]




EDO_A_12(2WLG)
OATWY_NEIME
[Raw transfer]




3 PsiBlast_PDB 93.7265%-144 - C1 -1OCX - MAA_ECOLI -
21 PsiBlast_CBE 93.6365%-143 - C1 -1OCX - MAA_ECOLI -
22 PsiBlast_CBE 93.3965%-144 - C1 -1OCX - MAA_ECOLI -
134 HHSearch 93.0465%-143 - C1 -1OCX - MAA_ECOLI -
137 HHSearch 90.8364%-137 - C1 -3HJJ 2.8 ?
1 PsiBlast_PDB 90.4064%-136 - C1 -2IC7 - ? -
5 PsiBlast_PDB 89.5161%-134 - C1 -3IGJ - ? -
4 PsiBlast_PDB 89.4661%-134 - C1 -3HJJ - ? -
131 HHSearch 88.6865%-135 - C1 -2P2O - ? -
2 PsiBlast_PDB 88.6064%-134 - C1 -2P2O - ? -
7 PsiBlast_PDB 83.8451%-135 - C1 -4ISX - ? -
6 PsiBlast_PDB 82.4051%-133 - C1 -3SRT 3.3 ?
133 HHSearch 82.3953%-127 - C1 -3SRT 3.3 ?
11 PsiBlast_PDB 79.0641%-138 - C1 -1KRV - THGA_ECOLI -
25 PsiBlast_CBE 78.9141%-139 - C1 -1KRU - THGA_ECOLI -
10 PsiBlast_PDB 78.8641%-141 - C1 -1KRU - THGA_ECOLI -
34 PsiBlast_CBE 78.8038%-135 - C1 -4EGG 3.7 ATRF2_STAAC
135 HHSearch 78.7135%-135 - C1 -3NZ2 - ? -
37 PsiBlast_CBE 78.6838%-133 - C1 -4EGG 3.0 ATRF2_STAAC
26 PsiBlast_CBE 78.6641%-140 - C1 -1KRU - THGA_ECOLI -
33 PsiBlast_CBE 78.5238%-132 - C1 -4EGG 3.7 ATRF2_STAAC
15 PsiBlast_PDB 78.2038%-128 - C1 -4EGG 3.0 ATRF2_STAAC
36 PsiBlast_CBE 78.1738%-133 - C1 -4EGG 3.0 ATRF2_STAAC
31 PsiBlast_CBE 77.8239%-130 - C1 -3V4E 3.2 ATRF2_STAAC
12 PsiBlast_PDB 77.5239%-131 - C1 -3V4E 4.4 ATRF2_STAAC
32 PsiBlast_CBE 77.4739%-130 - C1 -3V4E 3.3 ATRF2_STAAC
143 HHSearch 46.2939%-147 - C1 -2WLG 3.0 OATWY_NEIME