@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0681: (2016-03-17 )
MGKHLVEKMEIFKGNSKREIHKKIQLVTNEPYKITDERVTKLGIFKKQYEVTAVIMSEVAIADGRMDFQETFQKSVVKTRPKTDDLLKKEKLLEMLAAGAELAQSTPLLEERKTQEEELSSMRLELAALNRELAVKMREEREQNSDFVKFLKGRGISDTYVADFMQAGRKQFKQVETAHLDDITDWFVPYLSGKLAVEDSFDLSGHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITENIFRPKSRWLAERFVGTDRRQVVE

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_9(3SYN)
FLHF_BACSU
[Raw transfer]




GDP_B_17(3SYN)
FLHF_BACSU
[Raw transfer]




GTP_A_3(2PX3)
FLHF_BACSU
[Raw transfer]




GDP_C_2(3E70)
?
[Raw transfer]




GOL_B_14(3DMD)
?
[Raw transfer]




CHAIN_H_8(3SYN)
FLHF_BACSU
[Raw transfer]

-

EDO_A_2(2YHS)
FTSY_ECOLI
[Raw transfer]




GCP_B_6(1RJ9)
FTSY_THEAQ
[Raw transfer]




AF3_C_25(3SYN)
FLHF_BACSU
[Raw transfer]




CHAIN_G_7(3SYN)
FLHF_BACSU
[Raw transfer]

-

CHAIN_E_5(3SYN)
FLHF_BACSU
[Raw transfer]

-

GDP_B_17(3SYN)
FLHF_BACSU
[Raw transfer]




38 HHSearch 93.6327%-101 - C7 -2PX0 - FLHF_BACSU -
42 HHSearch 89.0821%-101 - C7 -2XXA - SRP54_ECOLI -
45 HHSearch 88.5524% -85 - C7 -3E70 - ? -
44 HHSearch 87.5621% -93 - C7 -2FFH - SRP54_THEAQ -
49 HHSearch 87.0022% -81 - C7 -3DM5 - SRP54_PYRFU -
40 HHSearch 85.9621% -99 - C7 -2OG2 - CFTSY_ARATH -
39 HHSearch 84.4621% -93 - C7 -3B9Q - CFTSY_ARATH -
41 HHSearch 83.3722% -88 - C7 -3KL4 - SRP54_SULSO -
51 HHSearch 82.9422% -75 - C7 -2V3C - SRP54_METJA -
47 HHSearch 82.7821% -85 - C7 -2YHS - FTSY_ECOLI -
46 HHSearch 82.6219% -84 - C7 -1VMA - ? -
1 PsiBlast_PDB 82.4634%-102 - C7 -2PX0 - FLHF_BACSU -
26 PsiBlast_CBE 81.9334%-109 - C7 -2PX0 - FLHF_BACSU -
21 PsiBlast_CBE 81.7334%-103 - C7 -3SYN 3.4 FLHF_BACSU
3 PsiBlast_PDB 81.6734%-101 - C7 -3SYN 7.4 FLHF_BACSU
2 PsiBlast_PDB 81.5534%-110 - C7 -2PX3 7.1 FLHF_BACSU
30 PsiBlast_CBE 81.5234% -99 - C7 -2PX0 - FLHF_BACSU -
25 PsiBlast_CBE 81.4534%-111 - C7 -2PX0 - FLHF_BACSU -
23 PsiBlast_CBE 81.3834%-102 - C7 -3SYN 7.5 FLHF_BACSU
27 PsiBlast_CBE 81.3234%-113 - C7 -2PX0 - FLHF_BACSU -
22 PsiBlast_CBE 81.2734%-102 - C7 -3SYN 3.4 FLHF_BACSU
5 PsiBlast_PDB 80.5830% -79 - C7 -3E70 5.8 ?
4 PsiBlast_PDB 77.9330% -81 - C7 -3DMD 3.2 ?