@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0692: (2016-03-17 )
MTTNMLDLFIEEASEHLQALNDNLLQLEKDPTNGQLVSEIFRSAHTFKGMSATMGFQQVADLTHAMENVLDEVRNNRLAVTEHLVDIIFTCTSHLETMVSDIQHGGQGAADISKTVADLEALLHPEQETDLTVEKTYRIAIQIEEAAILKAVRAVMCLERLAEMGIISETTPDREAIELEEFEQSFEVVLESAQTKDEIKAVILDISEIEKVTVTEEVEEVQVIEPIKKAAKQTTKRLENKTIRVQLEKIEKLMNVFEESVIERARIDEIAEKTNNKELMEHLGRFSSISKEIQNGLLNMRMVPVDSVFNRFPKMVRTLAKELGKKIDLVIEGADTEVDKIVIDEIGDPLVHLIRNSVDHGAETVEVRRKNGKNETATINLKAFHSGNNVVIEIADDGAGINKRKVLEKAIAKNVVTRAESTKMTDAEIFDLLFDSGFSTADQVSDLSGRGVGLDVVRNTILKIGGKISVESSENAGSTFRIEIPLTLSIIQSMLVATSERRYAVPLANVAEAITINPADIQHVHGKDLINYRETIIEVLDLGECFHETPLNDTDELLLLVVKNAKRTFGLIIKDIIGQREIVLKTLGGFFSESQIAFSGATILGDGRVVLILNLETF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_C_3(1I5C)
CHEA_THEMA
[Raw transfer]



ACP_B_5(1I5A)

[Raw transfer]



ACP_A_6(1I58)
CHEA_THEMA
[Raw transfer]



ACP_A_6(1I58)
CHEA_THEMA
[Raw transfer]



ADP_B_7(1I58)

[Raw transfer]



ACP_A_6(1I58)
CHEA_THEMA
[Raw transfer]



ADP_B_6(1I59)

[Raw transfer]



ANP_A_5(1I59)
CHEA_THEMA
[Raw transfer]



ANP_B_6(2CH4)

[Raw transfer]



ACP_A_6(1I5A)
CHEA_THEMA
[Raw transfer]



ANP_A_5(2CH4)
CHEA_THEMA
[Raw transfer]



ANP_A_5(2CH4)
CHEA_THEMA
[Raw transfer]



128_D_4(1I5D)

[Raw transfer]
41 HHSearch 89.6643%-104 - C1 -1B3Q - CHEA_THEMA -
1 PsiBlast_PDB 89.6443%-103 - C1 -1B3Q - CHEA_THEMA -
21 PsiBlast_CBE 88.1643%-112 - C1 -1B3Q - CHEA_THEMA -
31 Fugue 83.2644%-109 - C1 -2CH4 5.0 CHEA_THEMA
2 PsiBlast_PDB 82.8944%-111 - C1 -2CH4 5.0 CHEA_THEMA
22 PsiBlast_CBE 81.6044%-109 - C1 -2CH4 5.4
25 PsiBlast_CBE 69.4348% -76 - C1 -1I58 6.4
9 PsiBlast_PDB 68.8448% -78 - C1 -1I5C 6.5 CHEA_THEMA
33 Fugue 68.6948% -69 - C1 -1I58 5.8 CHEA_THEMA
7 PsiBlast_PDB 68.6348% -81 - C1 -1I59 6.0 CHEA_THEMA
50 HHSearch 68.6049% -70 - C1 -1I58 5.8 CHEA_THEMA
24 PsiBlast_CBE 68.3348% -65 - C1 -1I59 6.1
23 PsiBlast_CBE 68.2848% -73 - C1 -1I5A 6.3
8 PsiBlast_PDB 68.2848% -75 - C1 -1I5A 6.5 CHEA_THEMA
32 Fugue 68.1943%-122 - C1 -3UR1 - CHEA_THEMA -
6 PsiBlast_PDB 67.9948% -71 - C1 -1I58 5.8 CHEA_THEMA
35 Fugue 66.5947% -72 - C1 -1B3Q - CHEA_THEMA -
3 PsiBlast_PDB 66.5944%-118 - C1 -3UR1 - CHEA_THEMA -
5 PsiBlast_PDB 65.0348% -80 - C1 -1I5D 5.7
62 HHSearch 53.6844% -86 - C1 -1TQG - CHEA_THEMA -