@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0722: (2016-03-18 )
MKKVKASETLVQTLKNWGIDHVYGLPGDSIDTVVDALRKEQEAIEFIHVRHEEVATLAAAAYTKLTGKIGVALSIGGPGAIHLLNGMYDAKMDHVPMLVLAGQVTTDVLNTGFFQEVNLPAIFEDVAVYNKQIDNAETLADVVDEAIRTAYKEKGVAVLTIPNDIPSQVIKASLEAKPVKFEQENPKLDEAAIQEAVTLIEKAEKPVILAGLGTKHAGPELIAFSEKLKIPIIHSLPAKTIVPDDHPNALGNLGKIGTKPAYEAMQETDLLLMFGNDYPYSDYLPKKTDCIQIDIDPAKISKRFPAIVGLVGDAAEIISDLTAKIAPVEERKFLQACQENMQEWWKWLEEDIAQTSDPIAPEVVMANIQKIADKDAVFSIDVGTATVWSTRYLHLTPENDFIVSAWLGTMGCGLPGAIAAKKAFPDRQAIAIVGDGGFSMVMQDFVTAVGLNMPMIVVVLNNQQLSFIKYEQQSAGELNYAIDLPDINYAKFAESCGGIGFRVEKMADLEAAFENAKLATKPVIIDVSVDSAAAPLPGKIVMDEALGYTKFEIQSVLEDHRFAKMPPLKTILRRFL

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TDP_A_6(4KGD)
?
[Raw transfer]




TDM_A_10(4FEE)
?
[Raw transfer]




TDM_B_16(4FEE)
?
[Raw transfer]




TDM_B_21(4FEG)
?
[Raw transfer]




TPP_B_9(1POX)
POXB_LACPL
[Raw transfer]




TPP_B_7(1POW)
POXB_LACPL
[Raw transfer]




HTL_A_4(1V5G)
?
[Raw transfer]




TDP_B_14(4KGD)
?
[Raw transfer]




TDM_A_10(4FEG)
?
[Raw transfer]




TPP_A_5(1POW)
POXB_LACPL
[Raw transfer]




TPP_A_7(1POX)
POXB_LACPL
[Raw transfer]




TDP_A_3(3EY9)
POXB_ECOLI
[Raw transfer]




TDP_B_7(3EY9)
POXB_ECOLI
[Raw transfer]




GOL_A_8(4FEG)
?
[Raw transfer]




GOL_A_11(1POX)
POXB_LACPL
[Raw transfer]




GOL_B_12(1POX)
POXB_LACPL
[Raw transfer]




25 PsiBlast_CBE 97.7040% -93 - C4 -1POW 6.5 POXB_LACPL
21 PsiBlast_CBE 97.1040% -92 - C4 -1POX 7.0 POXB_LACPL
5 PsiBlast_PDB 96.9540% -92 - C4 -1POW 7.1 POXB_LACPL
1 PsiBlast_PDB 96.4440% -91 - C4 -1POX 6.9 POXB_LACPL
22 PsiBlast_CBE 96.3840% -93 - C4 -4KGD 7.4 ?
24 PsiBlast_CBE 95.9140% -92 - C4 -4FEE 7.3 ?
23 PsiBlast_CBE 95.9040% -91 - C4 -4FEG 7.6 ?
33 PsiBlast_CBE 95.6840% -99 - C4 -1Y9D - POXB_LACPL -
4 PsiBlast_PDB 95.6840% -93 - C4 -4KGD 7.2 ?
2 PsiBlast_PDB 95.4540% -91 - C4 -4FEE 7.4 ?
3 PsiBlast_PDB 95.3940% -92 - C4 -4FEG 7.8 ?
70 Fugue 95.2641%-102 * C4 *1POX 2.8 POXB_LACPL
31 PsiBlast_CBE 95.0140% -98 - C4 -1Y9D - POXB_LACPL -
28 PsiBlast_CBE 94.9140% -94 - C4 -2EZ9 - POXB_LACPL -
32 PsiBlast_CBE 94.7440% -99 - C4 -1Y9D - POXB_LACPL -
26 PsiBlast_CBE 94.5840% -92 - C4 -2EZU - POXB_LACPL -
27 PsiBlast_CBE 94.4540% -93 - C4 -2EZT - POXB_LACPL -
7 PsiBlast_PDB 94.3440% -92 - C4 -2EZ8 - POXB_LACPL -
10 PsiBlast_PDB 94.3340% -92 - C4 -2EZU - POXB_LACPL -
8 PsiBlast_PDB 94.2440% -92 - C4 -2EZ9 - POXB_LACPL -
13 PsiBlast_PDB 92.7734% -93 - C4 -1V5G 7.7 ?
34 PsiBlast_CBE 87.9732%-102 - C4 -3EY9 6.5 POXB_ECOLI
16 PsiBlast_PDB 87.5332%-103 - C4 -3EY9 6.6 POXB_ECOLI