@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0744: (2016-03-18 )
MLEVKHLKKSYKLGKKNETPVLKDINVTIQDGEFAAIIGKSGSGKSTLLNIISGLDTDYEGKVLYNGEDLQDIDLDAYHFNHIGFIFQSFHLVNHMSVVENVKVPLYLNPELSESDRNARALDLLKQVGLEDFASKKPTQLSGGQKQRVAIARSLANNPDMIIADEPTGALDSVTSDEIIKLLKALAAKGTTVIVVTHDLNIADQTDAVLRLADGEVISFERKKEVVQKVTHKNEKKLRLNWWATAKISFKSFFNRKFRNLLVALGTSIGIIAILLAFGLGNGVNQSLSKIFGTTFSPNQITTYYKEDGGSKSPEPTTPLTSSEIKKIKQLYEDENITEIYERTTVQGIKFEYDGEYLKGISGEMQEANFKPSRYEDLTVKDEYLLSGKMVTSDETGAVIPSSVAKAILGKKDSDELTKSDGDKLIGKKITLVYAGRNSDTKNTVKTETTISGITNPSKEGFARGFDVSTKTMNDFIKTTGIEKPILSVDAFTKTTAEAEEIVEKYEDNKDWANYSITNANAFVDTFSQFTDIIVYLIAFIAGLSLAVAGVMIAIVLYIGVVERTREIGVFRAIGYRKRHIRGLFMMEASYIIILANVLSSLVAVTIAKIASPILETKIGFEDMIHISFWNFLVTLAITITIGFIFSIYPSNKAAKLDAAEALRSE

Atome Classification :

(47 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ANP_J_5(3C41)
?
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ADP_A_3(1F3O)
Y796_METJA
[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]




ADP_B_6(2HYD)
Y1866_STAAM
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ADP_B_6(2Q0H)
?
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




ADP_C_11(4HLU)
ECFA1_THEMA
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




ADP_D_7(4HLU)
ECFA1_THEMA
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ATP_C_3(1VCI)
?
[Raw transfer]




21 PsiBlast_CBE 76.1448% -86 - C2 -1L2T 6.9 Y796_METJA
3 PsiBlast_PDB 75.5248% -74 - C2 -1F3O 5.3 Y796_METJA
104 Fugue 75.4826% -63 - C2 -1Z47 - ? -
22 PsiBlast_CBE 75.2948% -85 - C2 -3TIF 6.5 Y796_METJA
1 PsiBlast_PDB 74.7748% -81 - C2 -1L2T - Y796_METJA -
2 PsiBlast_PDB 74.0548% -78 - C2 -3TIF - Y796_METJA -
130 HHSearch 73.5248% -75 - C2 -3TIF - Y796_METJA -
25 PsiBlast_CBE 72.4438% -78 - C2 -3C4J 5.2 ?
7 PsiBlast_PDB 72.3138% -78 - C2 -2OLJ 5.8 ?
103 Fugue 72.1525% -57 - C2 -3TUZ - METN_ECOLI -
11 PsiBlast_PDB 71.7638% -74 - C2 -3C4J 6.7 ?
32 PsiBlast_CBE 71.4138% -70 - C2 -2OLK 6.4 ?
30 PsiBlast_CBE 71.2538% -73 - C2 -2OLK 6.4 ?
9 PsiBlast_PDB 71.1938% -76 - C2 -2OUK - ? -
42 PsiBlast_CBE 70.7735% -85 - C2 -3TUZ - METN_ECOLI -
26 PsiBlast_CBE 70.5938% -71 - C2 -2Q0H 6.1 ?
48 PsiBlast_CBE 70.4033% -71 - C2 -1Z47 - ? -
8 PsiBlast_PDB 70.2938% -69 - C2 -2OLK 6.2 ?
47 PsiBlast_CBE 70.2133% -71 - C2 -1Z47 - ? -
20 PsiBlast_PDB 70.1335% -83 - C2 -3TUI - METN_ECOLI -
33 PsiBlast_CBE 69.8038% -67 - C2 -2OLJ 5.8 ?
10 PsiBlast_PDB 69.7938% -69 - C2 -2Q0H 5.7 ?
6 PsiBlast_PDB 69.6338% -70 - C2 -3C41 6.6 ?
24 PsiBlast_CBE 69.6138% -71 - C2 -3C41 6.0 ?
31 PsiBlast_CBE 69.6038% -67 - C2 -2OLK 6.2 ?
17 PsiBlast_PDB 67.9936% -76 - C2 -4YMV 4.6 ?
37 PsiBlast_CBE 67.8836% -75 - C2 -4YMV 3.8 ?
38 PsiBlast_CBE 67.7936% -79 - C2 -4YMU 4.4 ?
12 PsiBlast_PDB 67.2539% -67 - C2 -4U00 4.4 ?
16 PsiBlast_PDB 67.2036% -75 - C2 -4YMU 4.8 ?
118 HHSearch 63.6131% -63 - C2 -3FVQ 7.2 FBPC_NEIG1
71 PsiBlast_CBE 62.4432% -68 - C2 -4HLU 4.3 ECFA1_THEMA
70 PsiBlast_CBE 62.1932% -67 - C2 -4HLU 3.8 ECFA1_THEMA
49 PsiBlast_CBE 60.9238% -81 - C2 -1B0U 4.4 HISP_SALTY
52 PsiBlast_CBE 57.8232% -50 - C2 -2HYD 4.3 Y1866_STAAM
53 PsiBlast_CBE 57.6432% -50 - C2 -2HYD 4.4 Y1866_STAAM
50 PsiBlast_CBE 57.0532% -50 - C2 -2ONJ 6.6 Y1866_STAAM
68 PsiBlast_CBE 56.2233% -62 - C2 -2FF7 4.9
78 PsiBlast_CBE 56.1833% -61 - C2 -3B5J 5.1
51 PsiBlast_CBE 56.1632% -48 - C2 -2ONJ 6.0 Y1866_STAAM
77 PsiBlast_CBE 55.8133% -57 - C2 -2FFB 4.5
72 PsiBlast_CBE 55.6933% -64 - C2 -2PMK 5.2
76 PsiBlast_CBE 55.1133% -58 - C2 -2FGK 5.8 HLYBP_ECOLX
74 PsiBlast_CBE 54.9833% -59 - C2 -2FGK 5.3 HLYBP_ECOLX
73 PsiBlast_CBE 54.7633% -60 - C2 -2FGK 5.5
75 PsiBlast_CBE 53.2033% -58 - C2 -2FGK 5.5 HLYBP_ECOLX
54 PsiBlast_CBE 52.3439% -59 - C2 -1VCI 3.2 ?