@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0764: (2016-03-18 )
VIYLDNEDVLDQAYNFAMEEYALRSLDENETYFMFYRMKPTIIVGKNQNTLEEINHPFVKDHHIDVLRRLSGGGAVYNDEGNISFSMITKDDGNSFQNFAKFTEPVIRALRKLGVNAELSGRNDIEVNGKKISGNAQFATKGRLYSHGTLLFDVDLSMLEKALQVDPEKYLSKGVKSVRSRVTTIREHLAEDIDILTFKQILLESIFETKDIPRYTFTEADKQGIEKLRTERYRNWDWTYGKSPKATIKRKKRFPAGTIEFQVSLEKGQVKEATIYGDFFGTEDVAELAEKIIGCRFERKSIQNAWQEINAKDYFGGIEKEAILDMLFE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMP_A_6(3A7A)
LPLA_ECOLI
[Raw transfer]



LAQ_A_2(3A7R)
LPLA_ECOLI
[Raw transfer]



LAQ_A_2(3A7R)
LPLA_ECOLI
[Raw transfer]



AMP_C_8(3A7A)
LPLA_ECOLI
[Raw transfer]



MPD_A_4(3R07)
LPLAN_THEAC
[Raw transfer]



EDO_A_11(1VQZ)
?
[Raw transfer]



EDO_A_16(1VQZ)
?
[Raw transfer]



EDO_A_16(1VQZ)
?
[Raw transfer]
25 HHSearch 96.9042% -91 - C4 -1VQZ 2.9 ?
1 PsiBlast_PDB 95.7843% -83 - C4 -1VQZ 3.0 ?
26 HHSearch 84.2130% -74 * C4 *3A7R 10.0 LPLA_ECOLI
3 PsiBlast_PDB 81.8931% -75 - C4 -3A7R 10.0 LPLA_ECOLI
6 PsiBlast_PDB 81.4830% -71 - C4 -4TVW - LPLA_ECOLI -
21 PsiBlast_CBE 81.4131% -68 - C4 -3A7A 5.6 LPLA_ECOLI
2 PsiBlast_PDB 80.9131% -77 - C4 -3A7A 6.4 LPLA_ECOLI
5 PsiBlast_PDB 77.3331% -77 - C4 -1X2H - LPLA_ECOLI -
28 HHSearch 75.7931% -84 - C4 -2C8M - LPLAN_THEAC -
27 HHSearch 75.6323% -76 - C4 -2E5A - LIPT_BOVIN -
12 PsiBlast_PDB 71.1630% -75 - C4 -2ARS - LPLAN_THEAC -
10 PsiBlast_PDB 68.8831% -89 - C4 -2C8M - LPLAN_THEAC -
8 PsiBlast_PDB 68.7531% -82 - C4 -2ARU - LPLAN_THEAC -
24 PsiBlast_CBE 68.5331% -88 - C4 -2C8M - LPLAN_THEAC -
23 PsiBlast_CBE 67.7531% -80 - C4 -2C8M - LPLAN_THEAC -
7 PsiBlast_PDB 67.6331% -84 - C4 -2ART - LPLAN_THEAC -
22 PsiBlast_CBE 67.5931% -80 - C4 -2C8M - LPLAN_THEAC -
11 PsiBlast_PDB 67.4631% -77 - C4 -3R07 3.1 LPLAN_THEAC
14 PsiBlast_PDB 67.4526% -71 - C4 -3A7U - LIPT_BOVIN -
13 PsiBlast_PDB 67.2226% -65 - C4 -2E5A - LIPT_BOVIN -