@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0769: (2016-03-18 )
MKWSEYANLAQLSLEKFYLADTKEQFLNNFYPTENPEEDNKVFNYWWLAHLVEVRLDAYLRTKKQADLEIAENTYMHNKNRNGETLIHDFYDDMLWNALAAYRLYKETGKPIYLEDAQLVWQDLVDTGWNNIMGGGFAWRRPQMYYKNTPVNAPFIILSCWLYNELNETKYLEWAMKTYEWQTKVLVREDGFVEDGINRLEDGAIDYEWKFTYNQGVYIGANLELYRITKEAKYLDTANKTADTSLKELTEDGIFKDEGSGGDEGLFKGIFYRYFTDLIEETADKTYRDFVLNSCQILVESAKVDGYLLMGMNWKEKPSGKIPYSAELSGMIALEMAAKLER

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DMJ_A_3(4D4C)
?
[Raw transfer]




MSX_B_6(4D4B)
?
[Raw transfer]




SUGAR_C_6(4BOJ)
?
[Raw transfer]

-

MSX_A_3(4D4B)
?
[Raw transfer]




SUGAR_A_4(4BOJ)
?
[Raw transfer]

-

GOL_A_12(4C1S)
?
[Raw transfer]




GOL_B_17(4C1S)
?
[Raw transfer]




EDO_A_3(4D4A)
?
[Raw transfer]




EDO_B_7(4D4A)
?
[Raw transfer]




EDO_B_8(4D4B)
?
[Raw transfer]




EPE_A_10(4MU9)
?
[Raw transfer]




1 PsiBlast_PDB 99.4592% -87 - C4 -3K7X - ? -
29 HHSearch 99.3394% -90 - C4 -3K7X - ? -
26 PsiBlast_CBE 69.1831% -68 - C4 -4BOJ - ? -
2 PsiBlast_PDB 68.3931% -70 - C4 -4BOK - ? -
7 PsiBlast_PDB 68.3131% -68 - C4 -4BOJ 2.1 ?
25 PsiBlast_CBE 67.6531% -67 - C4 -4BOJ 2.3 ?
6 PsiBlast_PDB 67.3932% -65 - C4 -4D4D - ? -
21 PsiBlast_CBE 66.6032% -66 - C4 -4D4D - ? -
3 PsiBlast_PDB 65.8732% -65 - C4 -4D4A 2.5 ?
8 PsiBlast_PDB 65.6632% -66 - C4 -5AGD - ? -
22 PsiBlast_CBE 65.5832% -64 - C4 -4D4C - ? -
24 PsiBlast_CBE 65.3532% -65 - C4 -4D4A 2.6 ?
27 PsiBlast_CBE 65.3232% -66 - C4 -5AGD - ? -
23 PsiBlast_CBE 65.3032% -64 - C4 -4D4B 3.6 ?
5 PsiBlast_PDB 64.8432% -64 - C4 -4D4C 2.9 ?
51 Fugue 64.7021% -53 - C4 -4V1S - ? -
4 PsiBlast_PDB 64.6832% -65 - C4 -4D4B 3.5 ?
10 PsiBlast_PDB 59.7630% -58 - C4 -4MU9 2.7 ?
52 Fugue 57.0616% -50 - C4 -1VD5 - UGL_BACGL -
34 HHSearch 54.5815% -43 - C4 -2AHF - UGL_BACGL -
9 PsiBlast_PDB 52.6434% -71 - C4 -4C1S 3.6 ?
28 PsiBlast_CBE 52.3834% -72 - C4 -4C1S 3.7 ?