@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0773: (2016-03-18 )
MKSFQALFIEKEADNTSLHFRETTIDNLPENEVTIEVHYSGINYKDGLAVLPDGKIVSEYPFIPGIDASGVVVNSKSDQFQVGDEVIVTSYDFGVSYFGGYSEFIRVPAEWVVPLPDGLSLKEAMILGTAGFTAALSVDALEFSGVTPNAGKIAVSGATGGVGSLSSAILSKRGFSVVASSGKSDAKEFLEKFGVSEIVSREAFQPEKVRALDKQLYAGAIDCVGGKPLSYLLTAVQYGGAVTTCGMSAGGKLDTTVFPFILRGIQLFGIDSVLCPMSKRERIWNRLATDYKLTNLESLATEIAFSELPESLHQVMNGGVTGRYLVKVK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_B_6(1O8C)
ACUI_ECOLI
[Raw transfer]




NDP_D_8(1O8C)
ACUI_ECOLI
[Raw transfer]




NDP_C_7(1O8C)
ACUI_ECOLI
[Raw transfer]




NAP_A_3(3NX4)
?
[Raw transfer]




2 PsiBlast_PDB 94.5050%-106 - C1 -1Y9E - YHFP_BACSU -
22 PsiBlast_CBE 93.9444%-100 - C1 -1O8C 9.9 ACUI_ECOLI
24 PsiBlast_CBE 93.8844%-103 - C1 -1O8C 10.2 ACUI_ECOLI
4 PsiBlast_PDB 93.8144%-104 - C1 -1O89 - ACUI_ECOLI -
5 PsiBlast_PDB 93.7444%-101 - C1 -1O8C - ACUI_ECOLI -
48 Fugue 92.3844%-102 - C1 -1O89 - ACUI_ECOLI -
23 PsiBlast_CBE 91.4944% -98 - C1 -1O8C 10.1 ACUI_ECOLI
6 PsiBlast_PDB 91.0843% -99 - C1 -3NX4 - ? -
21 PsiBlast_CBE 89.7347% -98 - C1 -4JXK - ? -
28 HHSearch 88.9944% -98 - C1 -3NX4 10.9 ?
3 PsiBlast_PDB 88.3847% -93 - C1 -4JXK - ? -
40 HHSearch 63.2420% -91 - C1 -3TQH - ? -
32 HHSearch 60.1521% -80 * C1 *2EIH - ? -
35 HHSearch 58.1321% -84 - C1 -3S2E - ? -
45 HHSearch 57.3918% -88 - C1 -2FZW - ADHX_HUMAN -
29 HHSearch 57.1719% -82 - C1 -3KRT - ? -
47 HHSearch 56.7419% -87 - C1 -3UKO - ADHX_ARATH -
18 PsiBlast_PDB 56.6624% -86 - C1 -4EYE - ? -
38 HHSearch 56.5716% -79 - C1 -3QWB - QOR_YEAST -
37 HHSearch 54.6524% -79 - C1 -3UOG - ? -