@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0810: (2016-03-18 )
MKQLLKIFVPVIVVALLMMLLATTMNRSEGYAGSNTLTIYNWGDYIDPSLITKFEKETGIKVIYQTFDSNEAMMTKIEQGGTTFDIAVPSDYAISKMKEENLLIPLDHSKLPNEKYLDPRFMDLSFDDDNKYSMPYFWGTLGIIYNKEMFPDKNFDTWNALFDPELKNQILLIDGAREVMGLGLNSLGYSLNDTNKAHLQAARDKLETMTPNVKAIVGDEIKLLMADNEAGVAVTFSGEAAEMLSENEDLEYVIPKDGSNLWFDNMVIPKTAKNVDGAHKFINFMLKPENAAINAEYVGYATPNAKAVELLPKEISSDERFYPDMDELNNLEVYDNLGKRMLSYYNELFLEFKMYRK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SPD_A_2(4JDF)
POTF_ECOLI
[Raw transfer]




SPD_A_3(3TTN)
SPUE_PSEAE
[Raw transfer]




SPD_A_3(3TTN)
SPUE_PSEAE
[Raw transfer]




PGE_A_2(4GL0)
?
[Raw transfer]




PUT_B_4(3TTM)
SPUD_PSEAE
[Raw transfer]




PUT_A_3(3TTM)
SPUD_PSEAE
[Raw transfer]




PUT_A_3(3TTM)
SPUD_PSEAE
[Raw transfer]




EPE_A_8(4EQB)
?
[Raw transfer]




EPE_B_15(4EQB)
?
[Raw transfer]




1 PsiBlast_PDB 95.8995% -94 - C1 -4GL0 3.5 ?
2 PsiBlast_PDB 87.9060% -97 - C1 -4EQB 3.0 ?
21 PsiBlast_CBE 87.7560% -96 - C1 -4EQB 3.1 ?
8 PsiBlast_PDB 74.9234% -86 - C1 -3TTK - SPUD_PSEAE -
4 PsiBlast_PDB 74.5636% -84 - C1 -3TTL - SPUE_PSEAE -
3 PsiBlast_PDB 73.6938% -79 - C1 -1POT - POTD_ECOLI -
27 HHSearch 73.4539% -80 - C1 -1POT - POTD_ECOLI -
6 PsiBlast_PDB 72.1135% -87 - C1 -4JDF 3.1 POTF_ECOLI
30 HHSearch 71.8137% -79 - C1 -3TTN 4.1 SPUE_PSEAE
5 PsiBlast_PDB 70.4636% -77 - C1 -3TTN 4.2 SPUE_PSEAE
29 HHSearch 69.9030% -83 * C1 *2V84 - ? -
28 HHSearch 69.4333% -72 - C1 -3TTM 2.4 SPUD_PSEAE
25 PsiBlast_CBE 69.1734% -77 - C1 -3TTM 2.3 SPUD_PSEAE
9 PsiBlast_PDB 69.0334% -75 - C1 -3TTM 2.4 SPUD_PSEAE
22 PsiBlast_CBE 67.2735% -71 - C1 -1A99 - POTF_ECOLI -
7 PsiBlast_PDB 66.7135% -71 - C1 -1A99 - POTF_ECOLI -
24 PsiBlast_CBE 65.5235% -69 - C1 -1A99 - POTF_ECOLI -
23 PsiBlast_CBE 65.4735% -73 - C1 -1A99 - POTF_ECOLI -
10 PsiBlast_PDB 63.4335% -91 - C1 -2V84 - ? -
11 PsiBlast_PDB 54.9624% -82 - C1 -4EDP - ? -