@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0825: (2016-03-18 )
MNAFDKFYKKTVEERHAILAEYADLNEEEQAFLASTGALSFDKANHMIENTIGIYSLPLGLGMNMLLNDKRYVVPMAMEEPSVVAAQSAGAKLIAQNGGITGSATKRKMIGQIELISVSDIQAAKENIIANEEQLIAIANQAHPSLQKRGGGAVKIQVRTAQTANDETLFIVHLLVDTQEAMGANMVNTMVETLAPELEMLTNGTANMRILSNLVDEATATAVCRINPESLATKTQSGEWVRDRIIAAYEFADADIYRAATHNKGIMNGIDAVIMAFGNDWRAVEAASHAYAARTGSYKPMSKWSKDADGYLVGELTLPMPVAFVGGSIAIHPIASLSKKIARVESAKELAMLVCAVGLTQNLAALKALVTEGIQRGHMSLQAKSLAMTAGAEADEIEIVATFLQESKQLNVVAAKEFIAKLRSEK

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

COA_E_5(1R31)
MVAA_PSEMV
[Raw transfer]




NAD_C_3(1QAY)
MVAA_PSEMV
[Raw transfer]




GOL_A_3(3QAE)
?
[Raw transfer]




HMG_C_3(1QAX)
MVAA_PSEMV
[Raw transfer]




1CV_A_3(4I4B)
MVAA_PSEMV
[Raw transfer]




GOL_A_3(3QAU)
?
[Raw transfer]




1CO_B_7(4I4B)
MVAA_PSEMV
[Raw transfer]




LVA_D_4(1T02)
MVAA_PSEMV
[Raw transfer]




GOL_B_8(4I56)
MVAA_PSEMV
[Raw transfer]




1CZ_A_3(4I56)
MVAA_PSEMV
[Raw transfer]




1CO_B_7(4I6W)
MVAA_PSEMV
[Raw transfer]




HMG_A_3(4I6A)
MVAA_PSEMV
[Raw transfer]




MEV_B_9(4I6Y)
MVAA_PSEMV
[Raw transfer]




GOL_F_6(1R7I)
MVAA_PSEMV
[Raw transfer]




MEV_A_3(4I6Y)
MVAA_PSEMV
[Raw transfer]




MEV_D_4(1QAY)
MVAA_PSEMV
[Raw transfer]




1CO_A_3(4I6W)
MVAA_PSEMV
[Raw transfer]




2 PsiBlast_PDB 95.8746%-101 - C9 -3QAU 2.9 ?
111 Fugue 92.6245%-100 - C9 -1QAY - MVAA_PSEMV -
3 PsiBlast_PDB 90.6846% -92 - C9 -1QAX - MVAA_PSEMV -
8 PsiBlast_PDB 90.3246% -93 - C9 -4I4B 2.8 MVAA_PSEMV
4 PsiBlast_PDB 89.2046%-101 - C9 -1QAY - MVAA_PSEMV -
101 HHSearch 88.6146% -99 - C9 -3QAE 2.1 ?
1 PsiBlast_PDB 88.1546% -99 - C9 -3QAE - ? -
30 PsiBlast_CBE 87.9446%-102 - C9 -1QAY 6.7 MVAA_PSEMV
24 PsiBlast_CBE 87.8546%-102 - C9 -4I64 - MVAA_PSEMV -
10 PsiBlast_PDB 87.8046%-101 - C9 -4I64 - MVAA_PSEMV -
9 PsiBlast_PDB 87.7446% -99 - C9 -4I56 2.8 MVAA_PSEMV
23 PsiBlast_CBE 87.7246%-104 - C9 -4I6A 2.2 MVAA_PSEMV
29 PsiBlast_CBE 87.6846%-100 - C9 -1R31 Error MVAA_PSEMV
21 PsiBlast_CBE 87.6746% -99 - C9 -4I6Y 2.8 MVAA_PSEMV
12 PsiBlast_PDB 87.5946%-101 - C9 -4I6W 2.8 MVAA_PSEMV
13 PsiBlast_PDB 87.5846% -99 - C9 -4I6Y 2.8 MVAA_PSEMV
22 PsiBlast_CBE 87.5746%-102 - C9 -4I6W 2.8 MVAA_PSEMV
25 PsiBlast_CBE 87.5246%-102 - C9 -4I56 2.2 MVAA_PSEMV
5 PsiBlast_PDB 87.4646%-101 - C9 -1R31 - MVAA_PSEMV -
11 PsiBlast_PDB 87.4446%-103 - C9 -4I6A - MVAA_PSEMV -
27 PsiBlast_CBE 87.4246%-101 - C9 -1T02 2.9 MVAA_PSEMV
26 PsiBlast_CBE 87.4146%-101 - C9 -4I4B 2.2 MVAA_PSEMV
31 PsiBlast_CBE 86.8646%-100 - C9 -1QAX 2.4 MVAA_PSEMV
28 PsiBlast_CBE 86.7046%-101 - C9 -1R7I 2.7 MVAA_PSEMV