@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0855: (2016-03-19 )
MKTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRFSATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLTYPVFVKPANLGSSVGISKATNKKELVDAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAIQAFLGLDASGLVRADFFLTEDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLAKERHAAKNALKYKLED

Atome Classification :

(57 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PHY_A_5(1IOW)
?
[Raw transfer]




ATP_B_8(2ZDQ)
DDL_THET8
[Raw transfer]




ADP_D_10(2ZDG)
DDL_THET8
[Raw transfer]




ADP_A_6(2I8C)
DDL_STAAC
[Raw transfer]




ADP_A_3(1E4E)
VANA_ENTFC
[Raw transfer]




ANP_C_6(2YZN)
DDL_THET8
[Raw transfer]




ATP_A_7(2ZDQ)
DDL_THET8
[Raw transfer]




ATP_A_3(4C5C)
DDLB_ECOLI
[Raw transfer]




ANP_B_5(2YZN)
DDL_THET8
[Raw transfer]




ADP_A_5(1EHI)
DDL_LEUMM
[Raw transfer]




ADP_A_5(1IOV)
DDLB_ECOLI
[Raw transfer]




ATP_B_11(4C5C)
DDLB_ECOLI
[Raw transfer]




ADP_D_16(2ZDH)
DDL_THET8
[Raw transfer]




ADP_C_9(2ZDG)
DDL_THET8
[Raw transfer]




ADP_A_5(1EHI)
DDL_LEUMM
[Raw transfer]




ADP_A_5(1EHI)
DDL_LEUMM
[Raw transfer]




ADP_A_4(4C5A)
DDLB_ECOLI
[Raw transfer]




ADP_B_7(2I8C)
DDL_STAAC
[Raw transfer]




ADP_A_5(1EHI)
DDL_LEUMM
[Raw transfer]




ADP_A_12(2ZDH)
DDL_THET8
[Raw transfer]




ANP_A_2(4L1K)
?
[Raw transfer]




ADP_A_7(2ZDG)
DDL_THET8
[Raw transfer]




ADP_B_15(1E4E)
VANA_ENTFC
[Raw transfer]




ADP_A_3(4C5B)
DDLB_ECOLI
[Raw transfer]




ADP_A_3(1E4E)
VANA_ENTFC
[Raw transfer]




ADP_A_4(1IOW)
DDLB_ECOLI
[Raw transfer]




ATP_A_2(3R5F)
?
[Raw transfer]




ADP_B_12(4C5B)
DDLB_ECOLI
[Raw transfer]




ADP_A_3(4FU0)
?
[Raw transfer]




ADP_A_4(2DLN)
DDLB_ECOLI
[Raw transfer]




ADP_B_10(4C5A)
DDLB_ECOLI
[Raw transfer]




ANP_A_4(2YZN)
DDL_THET8
[Raw transfer]




ADP_C_15(2ZDH)
DDL_THET8
[Raw transfer]




ADP_B_14(2ZDH)
DDL_THET8
[Raw transfer]




ADP_B_8(4FU0)
?
[Raw transfer]




ADP_B_8(2ZDG)
DDL_THET8
[Raw transfer]




ATP_A_6(3R5X)
DDL_BACAN
[Raw transfer]




ADP_A_2(3RFC)
?
[Raw transfer]




ADP_A_3(4ME6)
?
[Raw transfer]




ADP_A_4(1IOW)
?
[Raw transfer]




DAL_C_6(2YZM)
DDL_THET8
[Raw transfer]




DAL_B_5(2YZM)
DDL_THET8
[Raw transfer]




G1L_B_4(2I80)
DDL_STAAC
[Raw transfer]




DAL_A_4(2YZM)
DDL_THET8
[Raw transfer]




23 PsiBlast_CBE 94.3648%-104 - C2 -2I87 - DDL_STAAC -
21 PsiBlast_CBE 94.0348%-102 - C2 -2I80 6.3 DDL_STAAC
2 PsiBlast_PDB 93.8648%-103 - C2 -2I87 - DDL_STAAC -
3 PsiBlast_PDB 92.8048%-103 - C2 -2I8C 5.5 DDL_STAAC
22 PsiBlast_CBE 92.6248%-103 - C2 -2I8C 4.6 DDL_STAAC
4 PsiBlast_PDB 92.3549%-115 - C2 -3K3P - DDL_STRMU -
1 PsiBlast_PDB 92.3048%-104 - C2 -2I80 - DDL_STAAC -
77 HHSearch 91.4449% -96 - C2 -2I87 - DDL_STAAC -
78 HHSearch 88.6749%-106 - C2 -3K3P - DDL_STRMU -
7 PsiBlast_PDB 85.7239% -88 - C2 -3E5N - ? -
10 PsiBlast_PDB 84.8339% -84 - C2 -3R5F 6.9 ?
71 HHSearch 84.3340% -85 - C2 -3E5N - ? -
11 PsiBlast_PDB 83.6739% -87 - C2 -4L1K 6.1 ?
9 PsiBlast_PDB 83.3739% -86 - C2 -3RFC 5.2 ?
5 PsiBlast_PDB 82.9441% -82 - C2 -3I12 - DDLA_SALTY -
8 PsiBlast_PDB 82.0439% -88 - C2 -4ME6 4.9 ?
6 PsiBlast_PDB 81.8241% -81 - C2 -3Q1K - DDLA_SALTY -
74 HHSearch 81.6341% -75 - C2 -3I12 - DDLA_SALTY -
12 PsiBlast_PDB 81.5636%-101 - C2 -3TQT - DDL_COXBU -
26 PsiBlast_CBE 81.4841% -86 - C2 -3I12 - DDLA_SALTY -
39 PsiBlast_CBE 81.1333% -87 - C2 -1EHI 7.1 DDL_LEUMM
18 PsiBlast_PDB 80.4440% -86 - C2 -2ZDQ 8.7 DDL_THET8
70 HHSearch 79.5733% -84 - C2 -1EHI 7.1 DDL_LEUMM
28 PsiBlast_CBE 78.9240% -80 - C2 -2ZDH 7.0 DDL_THET8
47 PsiBlast_CBE 78.5832% -91 - C2 -1E4E 5.5 VANA_ENTFC
20 PsiBlast_PDB 78.5135% -87 - C2 -4FU0 7.3 ?
29 PsiBlast_CBE 78.4740% -83 - C2 -2ZDH 6.0 DDL_THET8
17 PsiBlast_PDB 78.4240% -80 - C2 -2ZDH 7.6 DDL_THET8
46 PsiBlast_CBE 78.3532% -90 - C2 -1E4E 5.5 VANA_ENTFC
27 PsiBlast_CBE 78.1740% -82 - C2 -2ZDQ 8.3 DDL_THET8
60 Fugue 78.0433% -83 - C2 -1EHI 7.1 DDL_LEUMM
37 PsiBlast_CBE 77.5640% -84 - C2 -2YZM 3.4 DDL_THET8
53 PsiBlast_CBE 77.3531% -94 - C2 -4C5B 6.2 DDLB_ECOLI
30 PsiBlast_CBE 77.3140% -80 - C2 -2ZDH 6.2 DDL_THET8
16 PsiBlast_PDB 77.2340% -83 - C2 -2ZDG 5.9 DDL_THET8
32 PsiBlast_CBE 77.1640% -78 - C2 -2ZDG 7.1 DDL_THET8
33 PsiBlast_CBE 77.1240% -87 - C2 -2ZDG 5.5 DDL_THET8
34 PsiBlast_CBE 77.0840% -87 - C2 -2YZN 4.9 DDL_THET8
38 PsiBlast_CBE 77.0335% -87 - C2 -4FU0 5.9 ?
36 PsiBlast_CBE 76.8640% -86 - C2 -2YZM 3.8 DDL_THET8
55 PsiBlast_CBE 76.7731% -93 - C2 -4C5A 5.7 DDLB_ECOLI
14 PsiBlast_PDB 76.5040% -83 - C2 -2YZM 3.6 DDL_THET8
15 PsiBlast_PDB 76.2740% -86 - C2 -2YZN 5.1 DDL_THET8
54 PsiBlast_CBE 76.2631% -94 - C2 -4C5A 6.6 DDLB_ECOLI
56 PsiBlast_CBE 76.2231% -98 - C2 -1IOW 5.6 DDLB_ECOLI
35 PsiBlast_CBE 76.0540% -81 - C2 -2YZN 5.4 DDL_THET8
31 PsiBlast_CBE 75.8540% -86 - C2 -2ZDG 5.3 DDL_THET8
50 PsiBlast_CBE 75.8231% -92 - C2 -4C5C 5.4 DDLB_ECOLI
52 PsiBlast_CBE 75.6931% -94 - C2 -4C5B 6.3 DDLB_ECOLI
51 PsiBlast_CBE 75.5431% -95 - C2 -4C5C 5.4 DDLB_ECOLI
49 PsiBlast_CBE 75.4831% -95 - C2 -1IOV 6.3 DDLB_ECOLI
75 HHSearch 74.8732% -74 - C2 -1E4E 5.5 VANA_ENTFC
48 PsiBlast_CBE 74.3931% -94 - C2 -2DLN 7.1 DDLB_ECOLI
81 HHSearch 71.4630% -90 - C2 -3R5X 5.7 DDL_BACAN
62 Fugue 58.5935% -93 - C2 -1EHI 7.1 DDL_LEUMM
63 Fugue 54.4531% -82 - C2 -1IOW Error ?
65 Fugue 42.1439% -53 - C2 -1IOW Error ?