@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0866: (2016-03-19 )
LTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDATDIAAAMLKMLAKEPDKTPVHITEERPLPSRGGGGYKGKNGKGGKGGGYRGGSGKGGSYRDRNNSGKGRRSGGGSGGGSGSGGGGNRDRRGGGEQRSGGNKGNYSQKSK

Atome Classification :

(65 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_7(3FHT)
DD19B_HUMAN
[Raw transfer]




ANP_B_12(3FHT)
DD19B_HUMAN
[Raw transfer]




ANP_A_3(4D25)
?
[Raw transfer]




ADP_A_3(4D26)
?
[Raw transfer]




ANP_A_3(3G0H)
DD19B_HUMAN
[Raw transfer]




8OD_B_7(3NBF)
?
[Raw transfer]




ANP_A_7(2J0S)
IF4A3_HUMAN
[Raw transfer]




ANP_A_3(3SQW)
MS116_YEAST
[Raw transfer]




ANP_A_3(3I5X)
MS116_YEAST
[Raw transfer]




ANP_A_3(3I5Y)
MS116_YEAST
[Raw transfer]




ADP_A_3(3PEW)
DBP5_YEAST
[Raw transfer]




ANP_A_3(3SQX)
MS116_YEAST
[Raw transfer]




ADP_A_3(3PEY)
DBP5_YEAST
[Raw transfer]




8OP_C_10(3NBF)
?
[Raw transfer]




ADP_A_3(3I61)
MS116_YEAST
[Raw transfer]




ADP_A_4(3FE2)
DDX5_HUMAN
[Raw transfer]




ADP_A_3(3I62)
MS116_YEAST
[Raw transfer]




ADP_A_4(4PX9)
DDX3X_HUMAN
[Raw transfer]




ADP_B_5(4PX9)
DDX3X_HUMAN
[Raw transfer]




AMP_A_2(2I4I)
DDX3X_HUMAN
[Raw transfer]




ADP_C_6(4PX9)
DDX3X_HUMAN
[Raw transfer]




ADP_A_3(2OXC)
DDX20_HUMAN
[Raw transfer]




8OP_B_6(3MWK)
?
[Raw transfer]




AMP_A_2(2GXQ)
?
[Raw transfer]




AMP_A_8(2GXS)
?
[Raw transfer]




ADP_B_8(3FE2)
DDX5_HUMAN
[Raw transfer]




8OX_B_6(3MWL)
?
[Raw transfer]




ADP_A_4(3RRM)
DBP5_YEAST
[Raw transfer]




AMP_B_5(3IUY)
DDX53_HUMAN
[Raw transfer]




AMP_A_3(3IUY)
DDX53_HUMAN
[Raw transfer]




ADP_A_2(4PXA)
DDX3X_HUMAN
[Raw transfer]




AMP_A_3(3BER)
DDX47_HUMAN
[Raw transfer]




ADP_A_3(2PL3)
DDX10_HUMAN
[Raw transfer]




8OD_A_5(3NBF)
?
[Raw transfer]




ADP_B_4(2OXC)
DDX20_HUMAN
[Raw transfer]




ADP_A_3(3DKP)
DDX52_HUMAN
[Raw transfer]




AMP_B_9(2GXS)
?
[Raw transfer]




AMP_A_3(4KBF)
?
[Raw transfer]




ADP_B_4(3FMO)
DD19B_HUMAN
[Raw transfer]




ADP_A_3(3EWS)
DD19B_HUMAN
[Raw transfer]




8OP_D_12(3NBF)
?
[Raw transfer]




ADP_A_3(3RRN)
DBP5_YEAST
[Raw transfer]




AMP_B_6(2VSX)
IF4A_YEAST
[Raw transfer]




AMP_A_5(2VSX)
IF4A_YEAST
[Raw transfer]




AMP_B_6(2VSO)
IF4A_YEAST
[Raw transfer]




AMP_A_5(2VSO)
IF4A_YEAST
[Raw transfer]




FLC_D_4(1T6N)
DX39B_HUMAN
[Raw transfer]




FLC_C_3(1T6N)
DX39B_HUMAN
[Raw transfer]




1PE_A_4(4BRW)
DHH1_YEAST
[Raw transfer]




NACID_E_1(2DB3)
VASA1_DROME
[Raw transfer]

-

IPA_E_5(1XTI)
DX39B_HUMAN
[Raw transfer]




110 HHSearch 90.9147%-101 - C4 -1HV8 - H669_METJA -
1 PsiBlast_PDB 90.8246%-110 - C4 -1HV8 - H669_METJA -
25 PsiBlast_CBE 90.4444% -96 - C4 -4KBG - ? -
26 PsiBlast_CBE 89.2744%-102 - C4 -4KBF - ? -
9 PsiBlast_PDB 89.2544% -92 - C4 -4KBF 5.3 ?
15 PsiBlast_PDB 87.3639% -89 - C4 -4PXA 4.7 DDX3X_HUMAN
112 HHSearch 86.8843%-105 - C4 -2I4I - DDX3X_HUMAN -
13 PsiBlast_PDB 86.8339%-102 - C4 -2I4I 5.7 DDX3X_HUMAN
30 PsiBlast_CBE 86.6235%-102 - C4 -4CT4 - DDX6_HUMAN -
14 PsiBlast_PDB 86.1235%-104 - C4 -4CT4 - DDX6_HUMAN -
3 PsiBlast_PDB 85.8541%-101 - C4 -2J0S 9.0 IF4A3_HUMAN
103 HHSearch 85.3140% -85 - C4 -2DB3 11.2 VASA1_DROME
6 PsiBlast_PDB 85.1141% -98 - C4 -3EX7 - IF4A3_HUMAN -
5 PsiBlast_PDB 85.0541% -98 - C4 -2HYI - IF4A3_HUMAN -
24 PsiBlast_CBE 84.8041% -98 - C4 -2HYI - IF4A3_HUMAN -
45 PsiBlast_CBE 84.6835%-101 - C4 -3EWS 6.6 DD19B_HUMAN
32 PsiBlast_CBE 84.5239% -89 - C4 -2DB3 - VASA1_DROME -
4 PsiBlast_PDB 84.5241% -98 - C4 -2XB2 - IF4A3_HUMAN -
16 PsiBlast_PDB 84.4939% -87 - C4 -2DB3 - VASA1_DROME -
31 PsiBlast_CBE 84.3339% -88 - C4 -2DB3 - VASA1_DROME -
28 PsiBlast_CBE 83.4739%-115 - C4 -2VSO 5.2 IF4A_YEAST
27 PsiBlast_CBE 83.3539%-113 - C4 -2VSX 4.4 IF4A_YEAST
11 PsiBlast_PDB 83.3139%-113 - C4 -2VSO 5.2 IF4A_YEAST
12 PsiBlast_PDB 82.9439%-113 - C4 -2VSX 4.9 IF4A_YEAST
47 PsiBlast_CBE 82.4235% -95 - C4 -3FHT 9.3 DD19B_HUMAN
46 PsiBlast_CBE 82.3835% -92 - C4 -3G0H 8.0 DD19B_HUMAN
48 PsiBlast_CBE 82.3235% -94 - C4 -3FHT 8.5 DD19B_HUMAN
40 PsiBlast_CBE 81.9834% -93 - C4 -3PEW 8.0 DBP5_YEAST
35 PsiBlast_CBE 81.8737% -90 - C4 -4D25 7.7 ?
41 PsiBlast_CBE 81.8334% -92 - C4 -3PEY 8.1 DBP5_YEAST
34 PsiBlast_CBE 81.2437% -88 - C4 -4D26 5.0 ?
38 PsiBlast_CBE 80.9634% -94 - C4 -3RRN 4.5 DBP5_YEAST
106 HHSearch 78.8635%-106 - C4 -1XTI 3.6 DX39B_HUMAN
39 PsiBlast_CBE 78.3334% -95 - C4 -3RRM 5.7 DBP5_YEAST
54 PsiBlast_CBE 77.8034% -87 - C4 -3SQX 9.5 MS116_YEAST
49 PsiBlast_CBE 77.6734% -87 - C4 -3SQW 9.3 MS116_YEAST
20 PsiBlast_PDB 77.6436%-102 - C4 -4BRW 1.9 DHH1_YEAST
50 PsiBlast_CBE 77.5934% -87 - C4 -3I62 7.5 MS116_YEAST
51 PsiBlast_CBE 77.4134% -88 - C4 -3I61 7.9 MS116_YEAST
53 PsiBlast_CBE 77.3634% -88 - C4 -3I5X 9.4 MS116_YEAST
52 PsiBlast_CBE 76.5534% -87 - C4 -3I5Y 8.8 MS116_YEAST
58 PsiBlast_CBE 65.1746%-105 - C4 -2GXQ 6.0 ?
56 PsiBlast_CBE 64.3446%-102 - C4 -2GXS 5.0 ?
57 PsiBlast_CBE 64.3146%-106 - C4 -2GXS 5.9 ?
60 PsiBlast_CBE 63.9546%-106 - C4 -3NBF 4.5 ?
63 PsiBlast_CBE 63.6746%-110 - C4 -3MWL 3.8 ?
62 PsiBlast_CBE 63.6246% -99 - C4 -3NBF 4.0 ?
65 PsiBlast_CBE 62.9946%-105 - C4 -3MWK 4.2 ?
59 PsiBlast_CBE 62.9846%-107 - C4 -3NBF 3.4 ?
61 PsiBlast_CBE 62.6746% -96 - C4 -3NBF 5.2 ?
76 PsiBlast_CBE 61.6239%-108 - C4 -4PX9 5.2 DDX3X_HUMAN
77 PsiBlast_CBE 61.5339%-108 - C4 -4PX9 5.7 DDX3X_HUMAN
75 PsiBlast_CBE 61.3039%-108 - C4 -4PX9 5.7 DDX3X_HUMAN
79 PsiBlast_CBE 59.1837%-100 - C4 -1T6N 2.5 DX39B_HUMAN
78 PsiBlast_CBE 58.9637%-103 - C4 -1T6N 2.9 DX39B_HUMAN
82 PsiBlast_CBE 58.8936% -95 - C4 -3FE2 5.3 DDX5_HUMAN
81 PsiBlast_CBE 58.7336% -95 - C4 -3FE2 6.4 DDX5_HUMAN
72 PsiBlast_CBE 58.6138% -95 - C4 -3BER 5.1 DDX47_HUMAN
89 PsiBlast_CBE 55.6435% -93 - C4 -3FMO 6.9 DD19B_HUMAN
84 PsiBlast_CBE 55.2138%-114 - C4 -3IUY 5.4 DDX53_HUMAN
80 PsiBlast_CBE 54.6536% -94 - C4 -2PL3 6.0 DDX10_HUMAN
83 PsiBlast_CBE 54.4838%-111 - C4 -3IUY 6.0 DDX53_HUMAN
87 PsiBlast_CBE 54.4534%-101 - C4 -2OXC 6.6 DDX20_HUMAN
88 PsiBlast_CBE 53.9334% -96 - C4 -2OXC 7.2 DDX20_HUMAN
95 PsiBlast_CBE 46.2033% -87 - C4 -3DKP 6.1 DDX52_HUMAN