@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0884: (2016-03-19 )
VKHIVIIGGGLSGLAAAYELQKTHPNYTWELVEKDEKLGGKFETVKRDGFLIEKGPDSFLARKPAGVGLVKDLGLEDKLIANATGRSYIYHQKALHPIPEGSVMGIPTDKEALLASTLVSEIGKARALQEPTMERNNQERDQALGDFFEARFGKELVKTIIEPLLSGIYAGDIYKMSLRATFPQFEQTVKKYGNLMDGLKESSMQTTGTKATIGAFRTLEGGLDALPKAIAAALPKENLHTAKQATEIVKKNNAYEISFADGDKMEADGVIIAATHDALIHLLAETTTEPFAGQPLTTLATVSLAYNEQDVPILPDGTGYLVARTAPYKTTACTWVQKKWPHMVPKNKMLLRGFVGKAGETWLEQASDEAIVSAVLRDYAEIMDLHAAPLFYEVSRMKSAMPQYLVNHQDRLKQLKKNIKTDYPGVFFAGMSYEGVGIPDCIAGAQTAAKELVDYLEEV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_3(3I6D)
PPOX_BACSU
[Raw transfer]



FAD_A_2(3LOV)
?
[Raw transfer]



FAD_B_6(3I6D)
PPOX_BACSU
[Raw transfer]



FAD_A_3(3I6D)
PPOX_BACSU
[Raw transfer]



FAD_A_2(3LOV)
?
[Raw transfer]



ACJ_A_4(3I6D)
PPOX_BACSU
[Raw transfer]



ACJ_B_7(3I6D)
PPOX_BACSU
[Raw transfer]
127 HHSearch 90.3843% -96 - C1 -3I6D 11.6 PPOX_BACSU
2 PsiBlast_PDB 89.7737% -96 - C1 -3LOV 11.7 ?
21 PsiBlast_CBE 89.3842% -93 - C1 -3I6D 11.3 PPOX_BACSU
130 HHSearch 89.0537% -93 - C1 -3LOV 11.7 ?
1 PsiBlast_PDB 88.6442% -94 - C1 -3I6D 11.6 PPOX_BACSU
126 HHSearch 86.0927% -82 * C1 *2IVD - PPOX_MYXXA -
3 PsiBlast_PDB 84.6226% -87 - C1 -2IVD - PPOX_MYXXA -
4 PsiBlast_PDB 84.4726% -87 - C1 -2IVE - PPOX_MYXXA -
129 HHSearch 77.6224% -82 - C1 -1SEZ - PPOM_TOBAC -
5 PsiBlast_PDB 77.2124% -78 - C1 -1SEZ - PPOM_TOBAC -
7 PsiBlast_PDB 76.9926% -78 - C1 -4IVM - PPOX_HUMAN -
128 HHSearch 76.5126% -77 - C1 -3NKS - PPOX_HUMAN -
6 PsiBlast_PDB 75.6225% -76 - C1 -4IVO - PPOX_HUMAN -
131 HHSearch 64.6816% -65 - C1 -1S3E - AOFB_HUMAN -
135 HHSearch 61.2814% -67 - C1 -2VVM - AOFN_ASPNG -
134 HHSearch 59.8218% -63 - C1 -3KA7 - ? -
133 HHSearch 55.8316% -54 - C1 -2YG5 - ? -
132 HHSearch 54.4815% -81 - C1 -3NRN - ? -
124 Fugue 54.0814% -52 - C1 -3UTG - ? -
145 HHSearch 53.5415% -61 - C1 -3K7M - ? -