@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0931: (2016-03-20 )
MYFIDNNNEKDPRINLAVEEFILTELNLDEPVLLFYINKPSIIIGRNQNTVEEIDTEYVEKNDVIVVRRLSGGGAVYHDEGNLNFSFITEDDGESFHNFAKFTQPIVEALKRLGVNAELKGRNDLLIDGFKVSGNAQFATKGKMFSHGTLMYDLNLDNVAASLKPRKDKIESKGIKSVRSRVANISDFMDQEMTTEEFRDLLLLYIFGVEKVEDVKEYKLTAADWEKIHEISAKRYGNWDWNYGKSPKFDLTRTKRFPVGAVDVRLNVQKGVITDIKIFGDFFGVKNVADIEEKLVNTTYKREVLAEALVDIDVKEYFGNITKDEFLDLLY

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LAQ_A_5(2E5A)
LIPT_BOVIN
[Raw transfer]



LAQ_A_2(3A7R)
LPLA_ECOLI
[Raw transfer]



ATP_A_3(2ARU)
LPLAN_THEAC
[Raw transfer]



LAQ_A_2(3A7R)
LPLA_ECOLI
[Raw transfer]



AMP_A_6(3A7A)
LPLA_ECOLI
[Raw transfer]



AMP_C_8(3A7A)
LPLA_ECOLI
[Raw transfer]



AMP_A_4(2ART)
LPLAN_THEAC
[Raw transfer]



MPD_A_4(3R07)
LPLAN_THEAC
[Raw transfer]



LPA_A_5(2C8M)
LPLAN_THEAC
[Raw transfer]



LPA_A_5(2C8M)
LPLAN_THEAC
[Raw transfer]



LPA_B_6(2C8M)
LPLAN_THEAC
[Raw transfer]



LPA_D_8(2C8M)
LPLAN_THEAC
[Raw transfer]



EDO_A_11(1VQZ)
?
[Raw transfer]



LPA_A_4(1X2H)
LPLA_ECOLI
[Raw transfer]



37R_B_6(4TVY)
LPLA_ECOLI
[Raw transfer]



EDO_A_16(1VQZ)
?
[Raw transfer]



EDO_A_16(1VQZ)
?
[Raw transfer]



37R_B_5(4TVY)
LPLA_ECOLI
[Raw transfer]
26 HHSearch 98.5945% -95 - C5 -1VQZ 2.9 ?
1 PsiBlast_PDB 98.1744% -91 - C5 -1VQZ 3.0 ?
27 HHSearch 90.4933% -80 * C5 *3A7R 10.2 LPLA_ECOLI
2 PsiBlast_PDB 81.4533% -74 - C5 -3A7A 6.5 LPLA_ECOLI
3 PsiBlast_PDB 81.0633% -74 - C5 -3A7R 10.2 LPLA_ECOLI
20 PsiBlast_CBE 80.7333% -68 - C5 -4TVW - LPLA_ECOLI -
6 PsiBlast_PDB 80.6433% -68 - C5 -4TVW - LPLA_ECOLI -
21 PsiBlast_CBE 80.4833% -70 - C5 -4TVW - LPLA_ECOLI -
18 PsiBlast_CBE 80.2533% -66 - C5 -3A7A 5.3 LPLA_ECOLI
22 PsiBlast_CBE 80.2133% -71 - C5 -4TVW - LPLA_ECOLI -
28 HHSearch 80.1125% -80 - C5 -2E5A - LIPT_BOVIN -
19 PsiBlast_CBE 79.7933% -81 - C5 -4TVY 3.4 LPLA_ECOLI
5 PsiBlast_PDB 78.9933% -73 - C5 -1X2H 3.2 LPLA_ECOLI
25 PsiBlast_CBE 78.1132% -91 - C5 -2C8M 3.5 LPLAN_THEAC
29 HHSearch 77.8032% -89 - C5 -2C8M 3.8 LPLAN_THEAC
8 PsiBlast_PDB 76.8832% -87 - C5 -2ART 5.1 LPLAN_THEAC
9 PsiBlast_PDB 76.7232% -83 - C5 -2ARU 6.6 LPLAN_THEAC
24 PsiBlast_CBE 76.4532% -89 - C5 -2C8M - LPLAN_THEAC -
23 PsiBlast_CBE 76.3232% -86 - C5 -2C8M 3.6 LPLAN_THEAC
10 PsiBlast_PDB 76.3132% -90 - C5 -2C7I - LPLAN_THEAC -
11 PsiBlast_PDB 75.8032% -94 - C5 -2C8M 3.8 LPLAN_THEAC
7 PsiBlast_PDB 74.7432% -81 - C5 -3R07 3.0 LPLAN_THEAC
13 PsiBlast_PDB 70.9031% -75 - C5 -2E5A 10.9 LIPT_BOVIN