@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0935: (2016-03-20 )
MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSLDEFFEKNEGGEFYYITKFGRHVYSDIDYSDTNKDYFFVFGKETTGLPDALLQENEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQNFGALLQEPNYDRKIFQD

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAH_B_4(4PZK)
?
[Raw transfer]




SAH_A_3(4PZK)
?
[Raw transfer]




SAH_G_17(4KGN)
?
[Raw transfer]




SAH_B_7(4JAL)
TRML_ECOLI
[Raw transfer]




SAH_C_12(4KGN)
?
[Raw transfer]




SAH_A_9(4KGN)
?
[Raw transfer]




SAH_E_14(4KGN)
?
[Raw transfer]




SAH_A_3(4JAL)
TRML_ECOLI
[Raw transfer]




SAH_A_3(3N4K)
TRML_YERPE
[Raw transfer]




SAH_A_3(1MXI)
TRML_HAEIN
[Raw transfer]




SAH_A_3(1MXI)
TRML_HAEIN
[Raw transfer]




EPE_A_4(4JAL)
TRML_ECOLI
[Raw transfer]




EDO_B_6(4JAL)
TRML_ECOLI
[Raw transfer]




ACY_A_2(3ONP)
?
[Raw transfer]




EDO_B_5(4JAL)
TRML_ECOLI
[Raw transfer]




1 PsiBlast_PDB 97.6369%-121 - C3 -4PZK 6.2 ?
21 PsiBlast_CBE 97.1069%-120 - C3 -4PZK 6.3 ?
2 PsiBlast_PDB 87.1354%-128 - C3 -3L8U - ? -
39 HHSearch 82.2652%-120 - C3 -3L8U - ? -
9 PsiBlast_PDB 81.1141%-118 - C3 -3N4K 6.2 TRML_YERPE
6 PsiBlast_PDB 80.6742%-110 - C3 -4JAL 6.6 TRML_ECOLI
22 PsiBlast_CBE 80.6242%-108 - C3 -4JAL 4.9 TRML_ECOLI
8 PsiBlast_PDB 79.1841%-115 - C3 -3N4J - TRML_YERPE -
29 PsiBlast_CBE 78.7041%-113 - C3 -4KGN - ? -
24 PsiBlast_CBE 78.2341%-117 - C3 -4KGN 6.6 ?
57 Fugue 78.2142%-113 - C3 -1MXI 5.4 TRML_HAEIN
25 PsiBlast_CBE 78.1541%-117 - C3 -4KGN - ? -
28 PsiBlast_CBE 77.6441%-110 - C3 -4KGN 6.6 ?
5 PsiBlast_PDB 77.4042%-107 - C3 -4JAK - TRML_ECOLI -
7 PsiBlast_PDB 77.2042%-108 - C3 -4KDZ - ? -
26 PsiBlast_CBE 77.1741%-109 - C3 -4KGN 6.6 ?
23 PsiBlast_CBE 77.0941%-113 - C3 -4KGN - ? -
27 PsiBlast_CBE 77.0041%-121 - C3 -4KGN - ? -
10 PsiBlast_PDB 76.8741%-111 - C3 -3E5Y - ? -
4 PsiBlast_PDB 76.3542%-106 - C3 -1MXI 5.4 TRML_HAEIN
11 PsiBlast_PDB 75.4441%-127 - C3 -4KGN 5.5 ?