@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0957: (2016-03-20 )
MQLITTENKLAGSKKALEIIEKGITSGEVNTLGLATGSTPETLYAELVKSDVDTKNVTTTNLDEYVGLAASDPNSYHYYMNDLLFSKKAFKESFLPNGEATDAEAECARYEEILSEHPIDIQVLGIGTNGHIGFNEPGTSFDSITHKVVLTDSTREANKRFFEREEDVPTHAYSMGIKSIMNAKKIILLAFGENKAQAIKETIKGPVDVNCPASVLQNHPDVTVILDNEAASLL

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

F6R_A_3(2BKX)
NAGB_BACSU
[Raw transfer]



F6R_A_3(2BKX)
NAGB_BACSU
[Raw transfer]



AGP_B_16(1HOR)
NAGB_ECOLI
[Raw transfer]



AGP_A_13(1HOR)
NAGB_ECOLI
[Raw transfer]



F6R_B_4(2BKX)
NAGB_BACSU
[Raw transfer]



GLP_A_3(2RI1)
NAGB_STRMU
[Raw transfer]



GLP_B_4(2RI1)
NAGB_STRMU
[Raw transfer]



FPC_A_10(1FQO)
NAGB_ECOLI
[Raw transfer]



F6R_B_16(1FQO)
NAGB_ECOLI
[Raw transfer]



FGS_B_6(2WU1)
NAGB_ECOLI
[Raw transfer]



FGS_A_4(2WU1)
NAGB_ECOLI
[Raw transfer]



TLA_A_5(1FS5)
NAGB_ECOLI
[Raw transfer]



TLA_A_5(1FS5)
NAGB_ECOLI
[Raw transfer]



PGA_A_3(2BKV)
NAGB_BACSU
[Raw transfer]



PGA_B_4(2BKV)
NAGB_BACSU
[Raw transfer]
1 PsiBlast_PDB 98.3254% -87 - C5 -2RI0 - NAGB_STRMU -
21 PsiBlast_CBE 98.0654% -85 - C5 -2RI0 - NAGB_STRMU -
22 PsiBlast_CBE 95.8154% -84 - C5 -2RI1 3.4 NAGB_STRMU
2 PsiBlast_PDB 95.2154% -83 - C5 -2RI1 3.7 NAGB_STRMU
54 HHSearch 92.8851% -87 - C5 -2RI0 - NAGB_STRMU -
55 HHSearch 90.1948% -76 - C5 -2BKX 4.7 NAGB_BACSU
57 HHSearch 86.5638% -76 - C5 -1NE7 - GNPI1_HUMAN -
44 Fugue 86.0237% -78 - C5 -1NE7 - GNPI1_HUMAN -
24 PsiBlast_CBE 85.8652% -86 - C5 -2BKV 3.2 NAGB_BACSU
3 PsiBlast_PDB 85.6552% -81 - C5 -2BKV 2.5 NAGB_BACSU
56 HHSearch 85.3837% -74 - C5 -3HN6 - NAGB_BORBU -
4 PsiBlast_PDB 85.2052% -81 - C5 -2BKX 4.7 NAGB_BACSU
37 PsiBlast_CBE 84.9836% -75 - C5 -1NE7 - GNPI1_HUMAN -
43 Fugue 84.8036% -76 - C5 -1DEA - NAGB_ECOLI -
36 PsiBlast_CBE 84.5336% -74 - C5 -1NE7 - GNPI1_HUMAN -
38 PsiBlast_CBE 84.4036% -75 - C5 -1NE7 - GNPI1_HUMAN -
53 HHSearch 84.3538% -74 * C5 *1FS5 2.4 NAGB_ECOLI
15 PsiBlast_PDB 84.1936% -74 - C5 -1NE7 - GNPI1_HUMAN -
23 PsiBlast_CBE 83.8952% -80 - C5 -2BKX 4.4 NAGB_BACSU
39 PsiBlast_CBE 83.7836% -72 - C5 -1NE7 - GNPI1_HUMAN -
28 PsiBlast_CBE 77.3239% -82 - C5 -2WU1 2.7 NAGB_ECOLI
5 PsiBlast_PDB 76.0639% -79 - C5 -1HOR 4.8 NAGB_ECOLI
14 PsiBlast_PDB 75.6139% -77 - C5 -2WU1 3.2 NAGB_ECOLI
30 PsiBlast_CBE 74.7639% -76 - C5 -1HOR 5.0 NAGB_ECOLI
33 PsiBlast_CBE 74.5039% -78 - C5 -1FQO 4.5 NAGB_ECOLI
11 PsiBlast_PDB 74.4539% -78 - C5 -1FS5 2.4 NAGB_ECOLI
9 PsiBlast_PDB 74.4339% -77 - C5 -1FQO 4.5 NAGB_ECOLI