@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0975: (2016-03-20 )
MINQKKIAGEKACEWIKDGMVVGLGTGSTVYYTIEKLGEMVNNGLHITGVATSEETNKQAQNLGIPLKSLNDVTEIDITIDGADEIDTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVRNLGKFPLPLEVIPFGWKQVERKLEKEHIQTNLRKQSSGEVYVTNNGNYILDIVNQTFTDAEMWQEKLAQIPGIVEHGLFLHYVDIIICAKANGEIELIKK

Atome Classification :

(45 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGO_D_20(3IXQ)
RPIA_METJA
[Raw transfer]




DER_C_19(1LK7)
RPIA_PYRHO
[Raw transfer]




5RP_A_5(4M8L)
RPIA_FRATW
[Raw transfer]




DER_A_17(1LK7)
RPIA_PYRHO
[Raw transfer]




5RP_B_4(3ENW)
RPIA_VIBVY
[Raw transfer]




DER_B_18(1LK7)
RPIA_PYRHO
[Raw transfer]




5RP_B_22(4M8L)
RPIA_FRATW
[Raw transfer]




A5P_A_4(1UJ6)
RPIA_THET2
[Raw transfer]




A5P_A_4(1UJ6)
RPIA_THET2
[Raw transfer]




CIT_D_4(1M0S)
RPIA_HAEIN
[Raw transfer]




5RP_A_3(3HHE)
RPIA_BARHE
[Raw transfer]




CIT_C_3(1M0S)
RPIA_HAEIN
[Raw transfer]




DER_D_20(1LK7)
RPIA_PYRHO
[Raw transfer]




5RP_A_3(3HHE)
RPIA_BARHE
[Raw transfer]




5RP_A_2(1UJ5)
RPIA_THET2
[Raw transfer]




CIT_C_3(1M0S)
RPIA_HAEIN
[Raw transfer]




FLC_B_6(4X84)
RPIA_PSEAE
[Raw transfer]




FLC_A_5(4X84)
RPIA_PSEAE
[Raw transfer]




5RP_B_6(3HHE)
RPIA_BARHE
[Raw transfer]




FLC_C_7(4X84)
RPIA_PSEAE
[Raw transfer]




5RP_A_3(3ENW)
RPIA_VIBVY
[Raw transfer]




FLC_D_8(4X84)
RPIA_PSEAE
[Raw transfer]




ABF_A_3(1O8B)
RPIA_ECOLI
[Raw transfer]




ABF_A_3(1O8B)
RPIA_ECOLI
[Raw transfer]




3GR_D_13(3KWM)
RPIA_FRATT
[Raw transfer]




ABF_A_3(3ENV)
RPIA_VIBVY
[Raw transfer]




EDO_A_3(3U7J)
?
[Raw transfer]




MLT_A_4(4NML)
?
[Raw transfer]




PGO_D_19(3IXQ)
RPIA_METJA
[Raw transfer]




PGO_A_8(3IXQ)
RPIA_METJA
[Raw transfer]




PGO_A_8(3IXQ)
RPIA_METJA
[Raw transfer]




PGO_C_14(3IXQ)
RPIA_METJA
[Raw transfer]




PGO_C_15(3IXQ)
RPIA_METJA
[Raw transfer]




PGO_B_12(3IXQ)
RPIA_METJA
[Raw transfer]




ABF_B_4(3ENV)
RPIA_VIBVY
[Raw transfer]




PEG_C_9(3KWM)
RPIA_FRATT
[Raw transfer]




PEG_C_12(3KWM)
RPIA_FRATT
[Raw transfer]




1 PsiBlast_PDB 98.0750% -88 - C9 -4GMK - ? -
21 PsiBlast_CBE 97.9850% -91 - C9 -4GMK - ? -
199 HHSearch 95.5746% -80 - C9 -3L7O - RPIA_STRMU -
204 HHSearch 95.4642% -88 - C9 -3HHE 2.9 RPIA_BARHE
22 PsiBlast_CBE 92.9940% -91 - C9 -3HHE 3.7 RPIA_BARHE
2 PsiBlast_PDB 92.7840% -85 - C9 -3HHE 2.9 RPIA_BARHE
29 PsiBlast_CBE 92.3240% -78 - C9 -1LK5 - RPIA_PYRHO -
25 PsiBlast_CBE 92.1536% -87 - C9 -2F8M - ? -
6 PsiBlast_PDB 92.1436% -87 - C9 -2F8M - ? -
28 PsiBlast_CBE 92.0840% -80 - C9 -1LK7 4.2 RPIA_PYRHO
26 PsiBlast_CBE 91.7740% -76 - C9 -1LK7 4.2 RPIA_PYRHO
30 PsiBlast_CBE 91.7640% -79 - C9 -1LK5 - RPIA_PYRHO -
8 PsiBlast_PDB 91.6640% -80 - C9 -1LK7 4.0 RPIA_PYRHO
7 PsiBlast_PDB 91.5040% -79 - C9 -1LK5 - RPIA_PYRHO -
31 PsiBlast_CBE 91.3140% -78 - C9 -1LK5 - RPIA_PYRHO -
198 HHSearch 91.1439% -78 - C9 -1LK5 - RPIA_PYRHO -
15 PsiBlast_PDB 91.0236% -93 - C9 -4NML 3.5 ?
27 PsiBlast_CBE 90.4740% -77 - C9 -1LK7 4.0 RPIA_PYRHO
202 HHSearch 90.4237% -80 - C9 -2F8M - ? -
44 PsiBlast_CBE 89.5639% -96 - C9 -3IXQ 3.1 RPIA_METJA
45 PsiBlast_CBE 89.0239% -92 - C9 -3IXQ 2.6 RPIA_METJA
47 PsiBlast_CBE 88.5839% -93 - C9 -3IXQ 2.0 RPIA_METJA
201 HHSearch 88.5737% -76 - C9 -1UJ6 4.0 RPIA_THET2
23 PsiBlast_CBE 88.5540% -79 - C9 -3ENW 2.9 RPIA_VIBVY
5 PsiBlast_PDB 88.3840% -78 - C9 -3ENW 3.4 RPIA_VIBVY
4 PsiBlast_PDB 88.3840% -72 - C9 -3ENV 2.1 RPIA_VIBVY
39 PsiBlast_CBE 88.1939% -75 - C9 -1M0S 3.0 RPIA_HAEIN
46 PsiBlast_CBE 88.1039% -96 - C9 -3IXQ 2.4 RPIA_METJA
19 PsiBlast_PDB 87.9136% -75 - C9 -1UJ6 4.0 RPIA_THET2
24 PsiBlast_CBE 87.8740% -80 - C9 -3ENV 2.9 RPIA_VIBVY
12 PsiBlast_PDB 87.7537% -71 - C9 -1UJ5 4.0 RPIA_THET2
36 PsiBlast_CBE 87.6139% -73 - C9 -3KWM 2.4 RPIA_FRATT
207 HHSearch 87.3837% -81 - C9 -3IXQ 2.0 RPIA_METJA
34 PsiBlast_CBE 87.2139% -74 - C9 -4M8L 4.1 RPIA_FRATW
11 PsiBlast_PDB 87.0639% -74 - C9 -4M8L 3.6 RPIA_FRATW
206 HHSearch 86.5539% -71 * C9 *1M0S 3.2 RPIA_HAEIN
13 PsiBlast_PDB 86.4639% -75 - C9 -1M0S 3.2 RPIA_HAEIN
37 PsiBlast_CBE 85.9039% -71 - C9 -3KWM 2.8 RPIA_FRATT
20 PsiBlast_PDB 83.6536% -63 - C9 -3U7J 2.8 ?
41 PsiBlast_CBE 82.2639% -66 - C9 -4X84 3.4 RPIA_PSEAE
43 PsiBlast_CBE 81.5039% -67 - C9 -4X84 3.5 RPIA_PSEAE
42 PsiBlast_CBE 81.1039% -68 - C9 -4X84 3.4 RPIA_PSEAE
40 PsiBlast_CBE 80.9439% -66 - C9 -4X84 3.5 RPIA_PSEAE
17 PsiBlast_PDB 72.5137% -70 - C9 -1O8B 4.5 RPIA_ECOLI
205 HHSearch 72.3738% -68 - C9 -1O8B 4.5 RPIA_ECOLI