@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0986: (2016-03-20 )
MIKLTNVVKKFGKIEAVKGINLEVEKGSLFAFLGENGAGKSTTLSMICTESEPTSGEIYIDDEKLTFKNRKLFRQKLGVVFQENVLDDLLTVRENLYNRASLYGKTKAEITERLALVSSIMGIEDILNRRFEKLSGGQKRRAEIARAIMHDPEILLLDEPTTGLDPKTRVSVWKIIDYLREELGMTVFLTTHYLEEAKDADQLAVIHKGKIIAQGTPTNIRSRFSVDKIFFYDAKVAELQKIMKKANLPFKVSKATMRVDVITQDVEILAILNQAAGLYGSFEVIKGNLDDAFISMIKEESDD

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_J_5(3C41)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




POP_A_9(2D62)
?
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]




ATP_C_3(1VCI)
?
[Raw transfer]




ADP_A_3(4YER)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




ADP_B_8(1MV5)
LMRA_LACLA
[Raw transfer]




ADP_D_10(1MV5)

[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




ANP_A_2(4AYW)
ABCBA_HUMAN
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




IPA_A_6(3TIF)
Y796_METJA
[Raw transfer]




113 Fugue 81.3928% -80 - C1 -3TUZ - METN_ECOLI -
27 PsiBlast_CBE 78.8938% -88 - C1 -4YMU 6.0 ?
13 PsiBlast_PDB 78.8538% -88 - C1 -4YMU - ? -
11 PsiBlast_PDB 78.1338% -90 - C1 -4YMS - ? -
15 PsiBlast_PDB 77.8138% -89 - C1 -4YMW - ? -
26 PsiBlast_CBE 77.6138% -88 - C1 -4YMV - ? -
2 PsiBlast_PDB 77.5240% -85 - C1 -2IT1 - ? -
124 HHSearch 77.5140% -86 - C1 -2IT1 - ? -
115 Fugue 77.2229% -79 - C1 -1OXS - ? -
10 PsiBlast_PDB 77.1136% -85 - C1 -1OXV - ? -
14 PsiBlast_PDB 77.0438% -88 - C1 -4YMV - ? -
12 PsiBlast_PDB 76.8738% -89 - C1 -4YMT - ? -
22 PsiBlast_CBE 76.7736% -91 - C1 -1OXV - ? -
24 PsiBlast_CBE 76.5336% -86 - C1 -1OXU - ? -
23 PsiBlast_CBE 76.4936% -87 - C1 -1OXV - ? -
129 HHSearch 76.4434% -80 - C1 -1OXX - ? -
21 PsiBlast_CBE 76.2540% -85 - C1 -2IT1 - ? -
141 HHSearch 76.0931% -86 - C1 -1B0U 5.7 HISP_SALTY
9 PsiBlast_PDB 75.8936% -86 - C1 -1OXU - ? -
55 PsiBlast_CBE 75.7833% -93 - C1 -3TUI - METN_ECOLI -
83 PsiBlast_CBE 74.3432% -89 - C1 -2OLK 5.8 ?
81 PsiBlast_CBE 74.0332% -87 - C1 -2OLK 6.0 ?
6 PsiBlast_PDB 73.2436% -86 - C1 -2D62 3.1 ?
71 PsiBlast_CBE 73.0532% -92 - C1 -3C41 5.5 ?
72 PsiBlast_CBE 72.0732% -90 - C1 -3C41 6.1 ?
69 PsiBlast_CBE 71.9031% -84 - C1 -4MKI 3.9 ECFA2_CALS4
70 PsiBlast_CBE 71.1331% -84 - C1 -4MKI 4.2 ECFA2_CALS4
3 PsiBlast_PDB 66.8536% -89 - C1 -1VCI 4.1 ?
60 PsiBlast_CBE 65.0634% -84 - C1 -3TIF 2.8 Y796_METJA
101 PsiBlast_CBE 58.2134% -84 - C1 -4AYW 3.0 ABCBA_HUMAN
103 PsiBlast_CBE 56.8434% -77 - C1 -4AYT 3.3 ABCBA_HUMAN
102 PsiBlast_CBE 56.5434% -76 - C1 -4AYX 3.0 ABCBA_HUMAN
109 PsiBlast_CBE 54.3835% -83 - C1 -1MV5 2.8
110 PsiBlast_CBE 54.2235% -89 - C1 -1MV5 3.3 LMRA_LACLA
112 PsiBlast_CBE 52.8835% -86 - C1 -1MV5 3.9 LMRA_LACLA
111 PsiBlast_CBE 51.2735% -76 - C1 -1MV5 4.2 LMRA_LACLA
1 PsiBlast_PDB 50.0742% 5 - C1 -4YER 6.3 ?