@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0988: (2016-03-20 )
MSQDLQKEVASRKTFAIISHPDAGKTTITEQLLLFGGVIRSAGTVKGKKSGKFATSDWMEIEKQRGISVTSSVMQFDYNGSRINILDTPGHSDFSEDTYRTLMAVDSAVMVIDAAKGIEAQTLKLFKVCRMRGIPIFTFINKMDRQGKMPLELLAELEEVLGIESYPMNWPIGMGKELAGLYDRYHRVIEQYRSEEDERFLPLGEDGDLKEAHAIQKSLYYDQALEEIMLLDEAGNDFSRERIIAGEQTPVFFGSALTNFGVETFLRTFVDFAPAPSSHESNEGVIEADNPKFSGFIFKIQANMNPAHRDRIAFIRICSGEFERGMNVTLTRTGKSLKLANSTQFMADDRETVNRAVAGDIIGLYDTGNYQIGDTITNGSKKLEFEKLPQFTPELFMRVYAKNVMKQKHFHKGVEQLVQEGAIQLFKTWRTEEYIIGAVGQLQFEVFEHRMRGEYNSEIRMEPIGKKIARWVKEEDADEKLSTARSMLVKDRFDQPLFLFENEFAINWFNDKNPDIELTSLL

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_C_3(2H5E)
RF3_ECOLI
[Raw transfer]



GNP_A_2(2C78)
EFTU1_THET8
[Raw transfer]



GDP_D_4(2H5E)
RF3_ECOLI
[Raw transfer]



GDP_C_3(2H5E)
RF3_ECOLI
[Raw transfer]



GDP_C_3(2H5E)
RF3_ECOLI
[Raw transfer]



GCP_A_2(2J7K)
EFG_THETH
[Raw transfer]



GNP_A_3(2YWF)
LEPA_AQUAE
[Raw transfer]



GCP_A_2(3J25)
TET1_ENTFL
[Raw transfer]
58 HHSearch 96.8148% -77 - C1 -3TR5 - RF3_COXBU -
3 PsiBlast_PDB 95.2747% -89 - C1 -2H5E 7.2 RF3_ECOLI
5 PsiBlast_PDB 94.7649% -82 - C1 -3TR5 - RF3_COXBU -
60 HHSearch 94.5647% -88 - C1 -2H5E 7.2 RF3_ECOLI
59 HHSearch 94.1148% -82 - C1 -3VQT - RF3_DESVM -
26 PsiBlast_CBE 93.5247% -89 - C1 -2H5E 7.7 RF3_ECOLI
49 Fugue 93.5044% -88 - C1 -2H5E 7.2 RF3_ECOLI
1 PsiBlast_PDB 92.6551% -89 * C1 *3VQT - RF3_DESVM -
24 PsiBlast_CBE 92.3751% -88 - C1 -3VQT - RF3_DESVM -
25 PsiBlast_CBE 92.0751% -86 - C1 -3VQT - RF3_DESVM -
21 PsiBlast_CBE 92.0051% -81 - C1 -3VR1 - RF3_DESVM -
22 PsiBlast_CBE 91.0951% -81 - C1 -3VR1 - RF3_DESVM -
23 PsiBlast_CBE 90.8351% -81 - C1 -3VR1 - RF3_DESVM -
2 PsiBlast_PDB 90.5851% -82 - C1 -3VR1 - RF3_DESVM -
19 PsiBlast_PDB 73.5728% -78 - C1 -2BM0 - ? -
12 PsiBlast_PDB 73.3228% -77 - C1 -1FNM - EFG_THETH -
52 Fugue 73.2928% -69 - C1 -4M1K - ? -
11 PsiBlast_PDB 72.9528% -75 - C1 -2OM7 - ? -
18 PsiBlast_PDB 72.8528% -80 - C1 -2XEX - EFG_STAAU -
16 PsiBlast_PDB 72.2628% -78 - C1 -2J7K 7.2 EFG_THETH
27 PsiBlast_CBE 50.1632% -89 - C1 -2YWF 6.8 LEPA_AQUAE