@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1014: (2016-03-20 )
LSKIKVEELTKIFGKKASKASSLLSQGKSKTDILKETGATIGVNKASFSVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTSGKIWLDGKELSSLNKKELLEVRRKSMSMVFQNFGLFPNRTINRNVEYGLEIQGMDKEEREKNAAESLALVGLAGYGDQYPSQLSGGMQQRVGLARALANNPDILLMDEAFSALDPLNRKDMQDQLLDLQDKMKKTIIFITHDLDEALRIGDHIMIMRDGSVVQTGSPEEILAHPANEYVEKFIEDVDRSKVYTASNVMIRPEIVNFEKDGPRVALKRMREAGTSSVFVVKRNRELVGIVHAAEVSKLVKENITSLETALHRDVPTTGLDTPLAEIMDTISTTTIPIAVTEDGKLKGIIIRGSVLAALSGNEVNVNA

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_J_5(4YMU)
?
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ANP_J_5(3C41)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_A_5(1L2T)
Y796_METJA
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




POP_A_9(2D62)
?
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




2 PsiBlast_PDB 86.5840% -93 - C1 -3TUI - METN_ECOLI -
112 Fugue 86.3631% -84 - C1 -3TUZ - METN_ECOLI -
3 PsiBlast_PDB 86.2440% -95 - C1 -3TUZ - METN_ECOLI -
22 PsiBlast_CBE 85.5140% -94 - C1 -3TUZ - METN_ECOLI -
25 PsiBlast_CBE 85.3240% -91 - C1 -3TUI - METN_ECOLI -
26 PsiBlast_CBE 85.1540% -89 - C1 -3TUI - METN_ECOLI -
128 HHSearch 84.2439% -79 * C1 *3TUI - METN_ECOLI -
24 PsiBlast_CBE 84.0740%-102 - C1 -3TUI - METN_ECOLI -
23 PsiBlast_CBE 83.5840% -91 - C1 -3TUZ - METN_ECOLI -
21 PsiBlast_CBE 83.4640% -99 - C1 -3TUZ - METN_ECOLI -
1 PsiBlast_PDB 82.9540% -86 - C1 -3DHW - METN_ECOLI -
13 PsiBlast_PDB 81.3439% -98 - C1 -4YMW - ? -
9 PsiBlast_PDB 81.0839% -95 - C1 -4YMS - ? -
119 HHSearch 80.9937% -82 - C1 -1Z47 - ? -
5 PsiBlast_PDB 80.7637% -94 - C1 -1Z47 - ? -
115 Fugue 80.6228% -63 - C1 -1Z47 - ? -
6 PsiBlast_PDB 80.2336% -94 - C1 -2IT1 - ? -
30 PsiBlast_CBE 80.1939% -95 - C1 -4YMU 5.2 ?
11 PsiBlast_PDB 79.9239% -93 - C1 -4YMU 5.6 ?
29 PsiBlast_CBE 79.5339% -95 - C1 -4YMV 4.7 ?
12 PsiBlast_PDB 79.3439% -98 - C1 -4YMV 5.1 ?
91 PsiBlast_CBE 74.9632% -89 - C1 -1B0U 4.8 HISP_SALTY
67 PsiBlast_CBE 74.0640% -96 - C1 -3FVQ 5.4 FBPC_NEIG1
20 PsiBlast_PDB 73.9533% -91 - C1 -2D62 3.0 ?
81 PsiBlast_CBE 73.6936% -84 - C1 -2OLK 4.7 ?
72 PsiBlast_CBE 72.4736% -81 - C1 -3C4J 5.2 ?
71 PsiBlast_CBE 72.3136% -86 - C1 -3C4J 4.3 ?
79 PsiBlast_CBE 72.1036% -79 - C1 -2OLK 4.8 ?
69 PsiBlast_CBE 72.0236% -81 - C1 -3C41 4.2 ?
17 PsiBlast_PDB 71.5640% -97 - C1 -4U00 4.3 ?
68 PsiBlast_CBE 71.5340% -98 - C1 -3FVQ 4.6 FBPC_NEIG1
70 PsiBlast_CBE 71.5136% -80 - C1 -3C41 5.2 ?
87 PsiBlast_CBE 68.2740% -87 - C1 -3TIF 4.1 Y796_METJA
85 PsiBlast_CBE 67.3840% -88 - C1 -1L2T 4.5 Y796_METJA
88 PsiBlast_CBE 67.2040% -86 - C1 -3TIF 4.1 Y796_METJA
86 PsiBlast_CBE 67.0940% -86 - C1 -1L2T 4.3 Y796_METJA
123 HHSearch 66.5337% -80 - C1 -3FVQ 5.7 FBPC_NEIG1