@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1027: (2016-03-20 )
MKFVKNNETAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDELLGIDYVIPDYSYLVKNKDKIKGLFITHGHEDHIGGVPYLLRDLNIPIYAGKLASALIRNKLEEHGLLRQTKIYEYEEDDVFKFRKTSISFFRTTHSIPDTYGIVVKTPSGNIVHTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDSTNAEVPNFTMSERVVGESIKNIFRDVEGRIIFATFASNIYRLQQVVESSIETGRKIAVFGRSMESAMEIGKQLGYIQAPKDTFIDVHQLNKTPAGNVTILCTGSQGEPMAALSRIANGTHRQIQIQPGDTVVFSSSPIPGNTTSVNRTINLLYQAGAEVIHGKVNNIHTSGHGGQQEQKLMLRLMKPKFFMPIHGEFRMQKIHAESAEECGVPEENSFIMANGDVLALTSETAHVAGKIHAASVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSIDMKNSRVMAGPDIISRGFIYMRESGNLIGEAQGLLTRHLNKVMEQKTTQWSEIKNEITDTLQPFLYEKTKRRPMILPIIMEV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

U5P_A_5(3BK2)
RNJ_THET2
[Raw transfer]



U5P_A_5(3BK2)
RNJ_THET2
[Raw transfer]



C5P_B_9(5A0V)
?
[Raw transfer]



NACID_E_3(5A0V)
?
[Raw transfer]
-
NACID_F_4(5A0T)
?
[Raw transfer]
-
NACID_E_3(5A0T)
?
[Raw transfer]
-
NACID_F_4(5A0V)
?
[Raw transfer]
-
CHAIN_B_2(3T3O)
RNJ_THET2
[Raw transfer]
-
GOL_A_10(3VPE)
?
[Raw transfer]



CHAIN_B_2(3T3N)
RNJ_THET2
[Raw transfer]
-
1 PsiBlast_PDB 99.6981%-113 - C1 -3ZQ4 - RNJ1_BACSU -
21 PsiBlast_CBE 99.2481%-114 - C1 -3ZQ4 - RNJ1_BACSU -
23 PsiBlast_CBE 98.4981%-113 - C1 -3ZQ4 - RNJ1_BACSU -
22 PsiBlast_CBE 98.2681%-115 - C1 -3ZQ4 - RNJ1_BACSU -
35 HHSearch 83.9142% -92 * C1 *3BK2 4.8 RNJ_THET2
5 PsiBlast_PDB 83.8141% -92 - C1 -3BK2 4.8 RNJ_THET2
4 PsiBlast_PDB 83.2141% -90 - C1 -3BK1 - RNJ_THET2 -
3 PsiBlast_PDB 82.7442% -95 - C1 -3T3O 7.9 RNJ_THET2
2 PsiBlast_PDB 82.5142% -96 - C1 -3T3N 8.0 RNJ_THET2
25 PsiBlast_CBE 76.6240% -94 - C1 -5A0T 13.4 ?
24 PsiBlast_CBE 76.3440% -94 - C1 -5A0V 9.5 ?
6 PsiBlast_PDB 75.5140% -93 - C1 -5A0T 13.1 ?
7 PsiBlast_PDB 75.3140% -92 - C1 -5A0V 12.3 ?
36 HHSearch 58.2119% -72 - C1 -3IEK - RNSE_THET8 -
37 HHSearch 55.9817% -68 - C1 -2AZ4 - ? -
38 HHSearch 55.6723% -67 - C1 -3AF5 - ? -
41 HHSearch 53.7919% -61 - C1 -2YCB - ? -
57 Fugue 53.7218% -61 - C1 -2AZ4 - ? -
40 HHSearch 53.6018% -70 - C1 -2I7T - CPSF3_HUMAN -
14 PsiBlast_PDB 52.6520% -54 - C1 -2AZ4 - ? -