Study : Lmo1032 (atomeDB@cbs.cnrs.fr)


Main Binding Site Prediction:


Binding Site Prediction

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Binding Site Number :C3_S1
Best Complexes choosen after comparative docking [pKd > 3] : 5 (5 maxi)

Complexes [Theoretical pKd]FileVolume (A3)
(FPocket)
Hydrophobicity
Score(FPocket)
Contacts Ligand/Receptor [<4A] in Site C3_S1
Complex: EDO_A_2(4KXU) / Model_1(4KXU/A) = [3.1] Download69.70-8.50MSELKLKSFEIRKDVLKMIYDAKTGHTGSDLSCADILVALCYGVLNVNPENPEALDRDRYVQSKGHAVEVLWAVLADKGFFAKEELADFSAFGSRIIGHPNNKVAGIEMNTGSLGHGLSVSVGMALAAKMDGKSYHTYTLMGDGELAEGSVWEGAMAAANYKLDNLTAIIDRNSLQISGRTEDVMSVEPLADKWRAFGWDVIEADGNNPDKLQAIFKTVNETGKPRLIIAKTIKGYGVKMAENVAKWHHYVPSSEEYEIAMKDLEERMEACRHE
Complex: TDP_A_3(3OOY) / Model_7(3OOY/A) = [4.5] Download1052.46-3.41MSELKLKSFEIRKDVLKMIYDAKTGHTGSDLSCADILVALCYGVLNVNPENPEALDRDRYVQSKGHAVEVLWAVLADKGFFAKEELADFSAFGSRIIGHPNNKVAGIEMNTGSLGHGLSVSVGMALAAKMDGKSYHTYTLMGDGELAEGSVWEGAMAAANYKLDNLTAIIDRNSLQISGRTEDVMSVEPLADKWRAFGWDVIEADGNNPDKLQAIFKTVNETGKPRLIIAKTIKGYGVKMAENVAKWHHYVPSSEEYEIAMKDLEERMEACRHE
Complex: TPP_A_2(3MOS) / Model_6(3MOS/A) = [4.6] Download747.00-3.41MSELKLKSFEIRKDVLKMIYDAKTGHTGSDLSCADILVALCYGVLNVNPENPEALDRDRYVQSKGHAVEVLWAVLADKGFFAKEELADFSAFGSRIIGHPNNKVAGIEMNTGSLGHGLSVSVGMALAAKMDGKSYHTYTLMGDGELAEGSVWEGAMAAANYKLDNLTAIIDRNSLQISGRTEDVMSVEPLADKWRAFGWDVIEADGNNPDKLQAIFKTVNETGKPRLIIAKTIKGYGVKMAENVAKWHHYVPSSEEYEIAMKDLEERMEACRHE
Complex: TDP_A_12(4KXV) / Model_2(4KXV/A) = [4.7] Download1051.74-3.41MSELKLKSFEIRKDVLKMIYDAKTGHTGSDLSCADILVALCYGVLNVNPENPEALDRDRYVQSKGHAVEVLWAVLADKGFFAKEELADFSAFGSRIIGHPNNKVAGIEMNTGSLGHGLSVSVGMALAAKMDGKSYHTYTLMGDGELAEGSVWEGAMAAANYKLDNLTAIIDRNSLQISGRTEDVMSVEPLADKWRAFGWDVIEADGNNPDKLQAIFKTVNETGKPRLIIAKTIKGYGVKMAENVAKWHHYVPSSEEYEIAMKDLEERMEACRHE
Complex: TDP_A_16(4KXW) / Model_3(4KXW/A) = [5.1] Download1059.31-3.41MSELKLKSFEIRKDVLKMIYDAKTGHTGSDLSCADILVALCYGVLNVNPENPEALDRDRYVQSKGHAVEVLWAVLADKGFFAKEELADFSAFGSRIIGHPNNKVAGIEMNTGSLGHGLSVSVGMALAAKMDGKSYHTYTLMGDGELAEGSVWEGAMAAANYKLDNLTAIIDRNSLQISGRTEDVMSVEPLADKWRAFGWDVIEADGNNPDKLQAIFKTVNETGKPRLIIAKTIKGYGVKMAENVAKWHHYVPSSEEYEIAMKDLEERMEACRHE
Consensus
[pKd Mean = 4.40]
-796
(s=382)
-4
(s=2)
MSELKLKSFEIRKDVLKMIYDAKTGHTGSDLSCADILVALCYGVLNVNPENPEALDRDRYVQSKGHAVEVLWAVLADKGFFAKEELADFSAFGSRIIGHPNNKVAGIEMNTGSLGHGLSVSVGMALAAKMDGKSYHTYTLMGDGELAEGSVWEGAMAAANYKLDNLTAIIDRNSLQISGRTEDVMSVEPLADKWRAFGWDVIEADGNNPDKLQAIFKTVNETGKPRLIIAKTIKGYGVKMAENVAKWHHYVPSSEEYEIAMKDLEERMEACRHE