@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1047: (2016-03-21 )
MQLLKDKFGRVHDYIRISVTDRCNLRCVYCMPEEGLTFLPHEKVLSKDEIVSFMELMVKFGIKKVRITGGEPLLRTDIVEIVRGLGAIPEIEDISITTNAMYLAKKAEALKEAGLTRVNISLDSLHADRFKAITRGGRLQKVLDGIQKAEEVGLFPIKLNVVLIKGQNDDEITDFLRFTKDKDINIRFIEYMPIGHAGTSWKEKYLPLDTIFEACNEAGYEYEPVDSIRGNGPSENFRIKGAKGTFGVIHPVSAHFCDSCNRLRLTADGYIKACLYWDEEMNIRPFIQDPVKLMQLVQKAIDNKPENHEMALKLQDEVQSNKPTWRRMSQIGG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_A_9(2FB3)
MOAA_STAA8
[Raw transfer]




SAM_B_6(2FB2)
MOAA_STAA8
[Raw transfer]




SAM_A_5(1TV8)
MOAA_STAA8
[Raw transfer]




SAM_A_5(1TV8)
MOAA_STAA8
[Raw transfer]




SAM_A_5(1TV8)
MOAA_STAA8
[Raw transfer]




SAM_A_5(2FB2)
MOAA_STAA8
[Raw transfer]




SAM_B_6(1TV8)
MOAA_STAA8
[Raw transfer]




SF4_B_7(1TV7)
MOAA_STAA8
[Raw transfer]




SF4_A_7(2FB2)
MOAA_STAA8
[Raw transfer]




SF4_B_11(2FB3)
MOAA_STAA8
[Raw transfer]




SF4_B_9(2FB2)
MOAA_STAA8
[Raw transfer]




DTU_A_11(1TV8)
MOAA_STAA8
[Raw transfer]




5AD_A_10(2FB3)
MOAA_STAA8
[Raw transfer]




20 HHSearch 94.3436%-106 * C2 *1TV8 5.8 MOAA_STAA8
46 Fugue 94.1035%-108 - C2 -1TV8 5.8 MOAA_STAA8
2 PsiBlast_PDB 93.6939%-112 - C2 -1TV8 5.8 MOAA_STAA8
19 PsiBlast_CBE 93.6738%-113 - C2 -2FB2 6.0 MOAA_STAA8
18 PsiBlast_CBE 93.2439%-111 - C2 -1TV7 3.2 MOAA_STAA8
4 PsiBlast_PDB 93.1038%-112 - C2 -2FB2 6.1 MOAA_STAA8
17 PsiBlast_CBE 92.4339%-113 - C2 -1TV8 5.4 MOAA_STAA8
16 PsiBlast_CBE 92.2039%-115 - C2 -2FB3 3.4 MOAA_STAA8
1 PsiBlast_PDB 92.1939%-111 - C2 -1TV7 - MOAA_STAA8 -
3 PsiBlast_PDB 90.8439%-108 - C2 -2FB3 5.5 MOAA_STAA8
6 PsiBlast_PDB 52.9123% -69 - C2 -3CIX - HYDE_THEMA -
8 PsiBlast_PDB 52.0423% -68 - C2 -4JY9 - HYDE_THEMA -
5 PsiBlast_PDB 51.9423% -68 - C2 -4JY8 - HYDE_THEMA -
7 PsiBlast_PDB 51.8423% -67 - C2 -4JXC - HYDE_THEMA -
27 HHSearch 51.4015% -83 - C2 -3T7V - PYLB_METBF -
48 Fugue 50.6014% -50 - C2 -1OLT - HEMN_ECOLI -
54 Fugue 50.2914% -56 - C2 -3T7V - PYLB_METBF -
51 Fugue 49.3814% -61 - C2 -4K36 - ANSME_CLOP1 -
25 HHSearch 49.3719% -83 - C2 -3RFA - RLMN_ECOLI -
21 HHSearch 48.9114% -73 - C2 -2A5H - KAMA_CLOSU -