@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1052: (2016-03-21 )
MASKTKKAIIDVKKQFEAVHKQFELVQILNEKGEIVNPDLMPDLTDDQLVELMTRMVWTRVLDQRSISLNRQGRLGFYAPTAGQEASQLASHYALEKHDYILPGYRDVPQLIWHGLPLTKAFLFSRGHFVGNQFPEDLNVLSPQIIIGAQIVQAAGVALGLKKRKKDAVVITYTGDGGSSQGDFYEGMNFAGAYHAPAIFVVQNNKFAISTPREKQSAAETLAQKAVAAGIPGVQVDGMDPLAVYAVTKFARERAVAGEGPTLIETMTYRYGPHTLSGDDPTRYRTKELDGEWELKDPIVRFRTFLEGKGLWNEEKENAVIDQAKEEIKVAIKEADATPKQTVTDLLKNMYETPTAPIKEQLAIYEAKESK

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_C_3(2BEU)
ODBA_HUMAN
[Raw transfer]

-

CHAIN_C_3(2BEV)
ODBA_HUMAN
[Raw transfer]

-

CHAIN_C_3(2BEW)
ODBA_HUMAN
[Raw transfer]

-

29 PsiBlast_CBE 97.1075% -77 - C4 -3DUF - ODPA_GEOSE -
28 PsiBlast_CBE 96.6075% -75 - C4 -3DUF - ODPA_GEOSE -
21 PsiBlast_CBE 96.4375% -75 - C4 -1W85 - ODPA_GEOSE -
23 PsiBlast_CBE 96.2075% -73 - C4 -1W85 - ODPA_GEOSE -
22 PsiBlast_CBE 96.1375% -79 - C4 -1W85 - ODPA_GEOSE -
2 PsiBlast_PDB 96.0775% -76 - C4 -3DUF - ODPA_GEOSE -
26 PsiBlast_CBE 95.9975% -75 - C4 -3DV0 - ODPA_GEOSE -
4 PsiBlast_PDB 95.9975% -73 - C4 -3DVA - ODPA_GEOSE -
30 PsiBlast_CBE 95.9375% -73 - C4 -3DVA - ODPA_GEOSE -
32 PsiBlast_CBE 95.7075% -71 - C4 -3DVA - ODPA_GEOSE -
27 PsiBlast_CBE 95.6875% -75 - C4 -3DUF - ODPA_GEOSE -
24 PsiBlast_CBE 95.3675% -75 - C4 -3DV0 - ODPA_GEOSE -
31 PsiBlast_CBE 94.7475% -76 - C4 -3DVA - ODPA_GEOSE -
3 PsiBlast_PDB 94.4075% -76 - C4 -3DV0 - ODPA_GEOSE -
25 PsiBlast_CBE 93.1575% -76 - C4 -3DV0 - ODPA_GEOSE -
35 PsiBlast_CBE 92.7875% -76 - C4 -1W88 - ODPA_GEOSE -
34 PsiBlast_CBE 92.6775% -82 - C4 -1W88 - ODPA_GEOSE -
33 PsiBlast_CBE 92.2075% -80 - C4 -1W88 - ODPA_GEOSE -
54 HHSearch 84.3176% -15 - C- -1W85 - ODPA_GEOSE -
1 PsiBlast_PDB 84.0175% -15 - C- -1W85 - ODPA_GEOSE -
16 PsiBlast_PDB 76.7833% -66 - C4 -2BEV 2.7 ODBA_HUMAN
17 PsiBlast_PDB 75.9233% -67 - C4 -2BEW 2.8 ODBA_HUMAN
15 PsiBlast_PDB 75.8733% -65 - C4 -2BEU 3.2 ODBA_HUMAN