@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1055: (2016-03-21 )
MVVGDFPEERDTIVIGAGPGGYVAAIRAAQLGQKVTIIEKEYYGGVCLNVGCIPSKALITIGHRFKEAGHSDNMGITADNVNLDFTKAQEWKGGVVNKLTSGVKGLLKKNKVEMLEGEAFFVDDHSLRVIHPDSAQTYTFNNVIIATGSRPIEIPGFKYGKRVLSSTGALALTEVPKKLVVIGGGYIGTELGGAFANLGTELTILEGGPEILPTYEKDMVSLVKRNLKSKNVEMVTKALAKSAEETENGVKVTYEANGETKTIEADYVLVTVGRRPNTDEIGLEQAGVKVTERGLVEVDKQGRSNVSNIFAIGDIVPGVPLAHKASYEAKIAAEAIAGEKSENDYTALPAVVFSDPELATVGLTEKEAKEKGFDVKAAKFPFGGNGRALSLDAPEGFVRLVTRKEDGLVIGAQVAGMNASDIISEIGLAIESGITAEDIALTIHAHPSLGELTMEAAELALGRPIHM

Atome Classification :

(53 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_3(3URH)
?
[Raw transfer]




FAD_B_5(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_B_8(2YQU)
?
[Raw transfer]




FAD_B_6(2EQ7)
?
[Raw transfer]




FAD_B_4(2EQ6)
?
[Raw transfer]




FAD_A_4(2EQ7)
?
[Raw transfer]




FAD_A_3(2EQ6)
?
[Raw transfer]




FAD_B_4(1LPF)
DLDH_PSEFL
[Raw transfer]




FAD_A_3(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_A_3(2A8X)
DLDH_MYCTU
[Raw transfer]




FAD_A_3(1LPF)
DLDH_PSEFL
[Raw transfer]




FAD_A_4(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_A_7(2YQU)
?
[Raw transfer]




FAD_A_3(2EQ6)
?
[Raw transfer]




FAD_A_3(3URH)
?
[Raw transfer]




FAD_A_7(2YQU)
?
[Raw transfer]




FAD_D_4(1JEH)
DLDH_YEAST
[Raw transfer]




FAD_A_4(1V59)
DLDH_YEAST
[Raw transfer]




FAD_B_5(3II4)
DLDH_MYCTU
[Raw transfer]




FAD_C_3(1LVL)
DLDH1_PSEPU
[Raw transfer]




FAD_A_3(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_A_3(3II4)
DLDH_MYCTU
[Raw transfer]




FAD_B_5(1V59)
DLDH_YEAST
[Raw transfer]




FAD_B_4(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_C_3(1OJT)
?
[Raw transfer]




FAD_C_3(1JEH)
DLDH_YEAST
[Raw transfer]




FAD_A_5(4K8D)
MERA_PSEAI
[Raw transfer]




FAD_A_3(2R9Z)
GASHR_MARGR
[Raw transfer]




FAD_A_3(2R9Z)
GASHR_MARGR
[Raw transfer]




FAD_A_4(1V59)
DLDH_YEAST
[Raw transfer]




FAD_A_4(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_B_10(2R9Z)
GASHR_MARGR
[Raw transfer]




FAD_B_11(4JDR)
DLDH_ECOLI
[Raw transfer]




FAD_A_3(4JDR)
DLDH_ECOLI
[Raw transfer]




FAD_C_3(1OJT)
?
[Raw transfer]




FAD_C_3(1LVL)
DLDH1_PSEPU
[Raw transfer]




FAD_C_3(1BHY)
?
[Raw transfer]




FAD_B_4(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




21 PsiBlast_CBE 96.3270% -97 - C1 -1EBD 12.6 DLDH1_GEOSE
1 PsiBlast_PDB 95.6170% -98 - C1 -1EBD - DLDH1_GEOSE -
122 HHSearch 95.2970% -96 - C1 -1EBD 12.9 DLDH1_GEOSE
22 PsiBlast_CBE 85.5043% -92 - C1 -4JQ9 - ? -
26 PsiBlast_CBE 84.1843% -92 - C1 -4JQ9 - ? -
34 PsiBlast_CBE 83.7945% -86 - C1 -2EQ9 - ? -
13 PsiBlast_PDB 83.5541% -89 - C1 -3URH 12.6 ?
31 PsiBlast_CBE 83.5145% -87 - C1 -2EQ9 - ? -
6 PsiBlast_PDB 83.4445% -86 - C1 -2EQ8 - ? -
33 PsiBlast_CBE 83.3045% -89 - C1 -2EQ9 - ? -
41 PsiBlast_CBE 83.2845% -85 - C1 -2EQ6 13.2 ?
7 PsiBlast_PDB 83.2845% -89 - C1 -2EQ9 - ? -
37 PsiBlast_CBE 83.1345% -87 - C1 -2EQ9 - ? -
40 PsiBlast_CBE 82.8545% -85 - C1 -2EQ8 - ? -
38 PsiBlast_CBE 82.8045% -86 - C1 -2EQ8 - ? -
2 PsiBlast_PDB 82.7943% -90 - C1 -4JDR 12.6 DLDH_ECOLI
27 PsiBlast_CBE 82.6043% -89 - C1 -4JDR 12.6 DLDH_ECOLI
25 PsiBlast_CBE 82.5443% -91 - C1 -4JQ9 - ? -
32 PsiBlast_CBE 82.5045% -87 - C1 -2EQ9 - ? -
5 PsiBlast_PDB 82.3845% -85 - C1 -2EQ6 13.3 ?
131 Fugue 81.4861% -91 - C1 -1EBD 10.7 DLDH1_GEOSE
110 HHSearch 81.2141% -86 - C1 -3URH 12.5 ?
121 HHSearch 81.1642% -86 - C1 -2YQU 12.9 ?
113 HHSearch 81.0538% -81 - C1 -1V59 12.5 DLDH_YEAST
111 HHSearch 80.8240% -84 * C1 *2QAE 12.6 DLDH_TRYCR
115 HHSearch 80.7545% -81 - C1 -2EQ6 13.3 ?
45 PsiBlast_CBE 80.0839% -83 - C1 -3LAD 12.8 DLDH_AZOVI
10 PsiBlast_PDB 79.9841% -86 - C1 -2YQU 12.9 ?
12 PsiBlast_PDB 79.6439% -82 - C1 -3LAD 12.2 DLDH_AZOVI
42 PsiBlast_CBE 79.4941% -85 - C1 -2YQU 12.9 ?
9 PsiBlast_PDB 79.2841% -85 - C1 -2EQ7 13.1 ?
114 HHSearch 79.1239% -81 - C1 -3LAD 12.3 DLDH_AZOVI
112 HHSearch 79.0542% -81 - C1 -1OJT 11.0 ?
89 PsiBlast_CBE 78.9936% -91 - C1 -3II4 12.6 DLDH_MYCTU
80 PsiBlast_CBE 78.9237% -76 - C1 -1V59 12.7 DLDH_YEAST
109 HHSearch 78.8740% -83 - C1 -1LVL 12.4 DLDH1_PSEPU
81 PsiBlast_CBE 78.7337% -78 - C1 -1V59 12.6 DLDH_YEAST
43 PsiBlast_CBE 78.2141% -85 - C1 -2EQ7 13.0 ?
11 PsiBlast_PDB 77.4339% -83 - C1 -1LPF 12.4 DLDH_PSEFL
90 PsiBlast_CBE 77.3336% -88 - C1 -3II4 12.5 DLDH_MYCTU
82 PsiBlast_CBE 77.2037% -77 - C1 -1JEH 12.9 DLDH_YEAST
119 HHSearch 76.6837% -83 - C1 -2A8X 12.6 DLDH_MYCTU
20 PsiBlast_PDB 76.5537% -77 - C1 -1JEH 12.9 DLDH_YEAST
44 PsiBlast_CBE 76.1139% -80 - C1 -1LPF 12.5 DLDH_PSEFL
8 PsiBlast_PDB 74.7540% -81 - C1 -1LVL 10.8 DLDH1_PSEPU
84 PsiBlast_CBE 73.4042% -82 - C1 -1BHY 9.8 ?
83 PsiBlast_CBE 73.1442% -82 - C1 -1OJT 9.8 ?
19 PsiBlast_PDB 72.7640% -76 - C1 -2QAE 11.1 DLDH_TRYCR
79 PsiBlast_CBE 72.6940% -76 - C1 -2QAE 11.2 DLDH_TRYCR
95 PsiBlast_CBE 68.2132% -81 - C1 -4K8D 12.0 MERA_PSEAI
93 PsiBlast_CBE 66.4731% -73 - C1 -2R9Z 10.1 GASHR_MARGR
94 PsiBlast_CBE 65.4431% -74 - C1 -2R9Z 11.9 GASHR_MARGR
129 HHSearch 65.0030% -72 - C1 -2R9Z 11.9 GASHR_MARGR