@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1072: (2016-03-21 )
MNRIKKVLVANRGEIAIRVMRACTELKIKTVAIYSQEDTGSFHRYKSDEAYLVGAGKKPIDAYLDIENIIEIAKESGADAIHPGYGFLSENIEFARRCEQEGIIFVGPKSKHLDMFGDKIKAKEQALLADIPVIPGSNGPVAGIKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESKEHVKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERDCSIQRRHQKVVEVAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLVEGDDFYFIEVNPRVQVEHTITEMITGIDIVQSQLFIADGYALHDQLVAIPKQEDIHIHGSAIQSRITTEDPLNNFMPDTGRVDTYRSTGGFGVRLDAGNGFQGTVVTPFYDSLLVKLCTWGMTFEQATRKMRRNLIEFRIRGVKTNIPFLLNVVRHPDFASGNYNTSFIDTTPELFKFPHIRDRGTKTLRYIGNVTVNGFPGIKHRDKPVYAEPRLPKIPYGSQISPGTKQILDAKGPEGVVDWVKKQEEVLLTDTTLRDAHQSLLATRVRSKDIFQVADAMAHLLPNMFSFEMWGGATFDVAYRFLNEDPWVRLETLRKQIPNVMFQMLLRGANAVGYKNYPDNVIREFVKQSAQSGVDVFRVFDSLNWIKGMEVSIDAVREAGKVVEAAICYTGDIDDDTRTKYTIDYYKDMAKELVAQGTHILGIKDMAGLLKPQAAYRLIGELKDTVDVPIHLHTHDTSGNGIYTYAAAVSAGVDIVDVASSAMSGATSQPSMTGLYYGLVNGNRQTNLDAQNSQIINHYWEDVRHYYKDFDNALNSPQTEVYIHEMPGGQYTNLQQQAIAVGLGDRWDEVKEMYTVVNQMFGDIVKVTPSSKVVGDLALFMVQNELSEEDVYEKGDTIDFPDSVIEFFMGEIGQPYGGFPEKLQKLVLKGRTPLTDRPGALMEPVNFVDVKAELKEKMGYEPTEKDVISYILYPKVFLDYQDMINKYGDVTVLDTPTFYKGMRLGETIEVELEKGKILLIKLNSIGEPIADGTRVIYFELNGQPREINIQDMNVQSTVIARRKIDTTNPEHVGATMTGSVIQVVVKKGDSVKKGDPLLITEAMKMETTIQAPFDGEVSSIYVSDGDTIESGDLLIEVNRI

Atome Classification :

(63 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_4(1DV2)
ACCC_ECOLI
[Raw transfer]




ATP_A_3(1DV2)
ACCC_ECOLI
[Raw transfer]




ANP_A_5(2J9G)
ACCC_ECOLI
[Raw transfer]




ADP_B_7(3G8C)
ACCC_ECOLI
[Raw transfer]




ATF_A_4(2VR1)
ACCC_ECOLI
[Raw transfer]




ADP_B_4(3G8D)
ACCC_ECOLI
[Raw transfer]




ADP_A_8(3OUZ)
?
[Raw transfer]




ADP_A_2(3RV4)
ACCC_ECOLI
[Raw transfer]




ADP_A_3(3G8C)
ACCC_ECOLI
[Raw transfer]




ADP_A_4(3RUP)
ACCC_ECOLI
[Raw transfer]




ADP_A_4(3RV3)
ACCC_ECOLI
[Raw transfer]




ADP_B_8(2J9G)
ACCC_ECOLI
[Raw transfer]




AP2_A_2(2VQD)
ACCC_PSEAE
[Raw transfer]




ANP_A_3(2VPQ)
?
[Raw transfer]




ANP_B_7(2VPQ)
?
[Raw transfer]




ANP_A_3(2VPQ)
?
[Raw transfer]




LZL_A_3(2V5A)
ACCC_ECOLI
[Raw transfer]




LZJ_A_3(2V58)
ACCC_ECOLI
[Raw transfer]




LZK_A_3(2V59)
ACCC_ECOLI
[Raw transfer]




LZK_B_4(2V59)
ACCC_ECOLI
[Raw transfer]




LZJ_B_5(2V58)
ACCC_ECOLI
[Raw transfer]




OA4_A_3(2W6P)
ACCC_ECOLI
[Raw transfer]




L23_A_4(2W71)
ACCC_ECOLI
[Raw transfer]




L22_A_3(2W70)
ACCC_ECOLI
[Raw transfer]




L22_B_5(2W70)
ACCC_ECOLI
[Raw transfer]




OA2_A_3(2W6N)
ACCC_ECOLI
[Raw transfer]




JZL_A_3(3JZI)
ACCC_ECOLI
[Raw transfer]




L23_C_6(2W71)
ACCC_ECOLI
[Raw transfer]




L21_A_3(2W6Z)
ACCC_ECOLI
[Raw transfer]




OA5_B_5(2W6Q)
ACCC_ECOLI
[Raw transfer]




GOL_A_5(3VA7)
?
[Raw transfer]




OA5_A_3(2W6Q)
ACCC_ECOLI
[Raw transfer]




OA2_B_5(2W6N)
ACCC_ECOLI
[Raw transfer]




GOL_A_5(3VA7)
?
[Raw transfer]




JZL_B_4(3JZI)
ACCC_ECOLI
[Raw transfer]




ADP_A_3(4RZQ)
ACCC_HAEIN
[Raw transfer]




OA1_B_5(2W6M)
ACCC_ECOLI
[Raw transfer]




JZK_B_4(3JZF)
ACCC_ECOLI
[Raw transfer]




OA1_A_3(2W6M)
ACCC_ECOLI
[Raw transfer]




OA3_A_3(2W6O)
ACCC_ECOLI
[Raw transfer]




OA3_C_5(2W6O)
ACCC_ECOLI
[Raw transfer]




ADP_A_3(3RUP)
ACCC_ECOLI
[Raw transfer]




ADP_B_9(3RUP)
ACCC_ECOLI
[Raw transfer]




ADP_B_7(3RV3)
ACCC_ECOLI
[Raw transfer]




23 PsiBlast_CBE 85.5799% -94 - C2 -4QSH - ? -
22 PsiBlast_CBE 85.4999% -93 - C2 -4QSH - ? -
1 PsiBlast_PDB 85.3799% -94 - C2 -4QSK - ? -
21 PsiBlast_CBE 85.1199% -94 - C2 -4QSK - ? -
2 PsiBlast_PDB 85.0999% -93 - C2 -4QSH - ? -
3 PsiBlast_PDB 82.8599% -93 - C2 -4QSL - ? -
25 PsiBlast_CBE 82.7061% -88 - C2 -3HO8 - ? -
27 PsiBlast_CBE 82.2161% -89 - C2 -3HB9 - ? -
26 PsiBlast_CBE 81.9661% -88 - C2 -3HO8 - ? -
36 PsiBlast_CBE 81.8261% -88 - C2 -4HNU - ? -
39 PsiBlast_CBE 81.5861% -89 - C2 -4HNT - ? -
4 PsiBlast_PDB 81.4761% -86 - C2 -3HO8 - ? -
38 PsiBlast_CBE 81.0761% -87 - C2 -4HNU - ? -
41 PsiBlast_CBE 80.4561% -88 - C2 -4HNT - ? -
24 PsiBlast_CBE 77.2061% -83 - C2 -3HO8 - ? -
7 PsiBlast_PDB 76.8461% -86 - C2 -3BG5 - ? -
6 PsiBlast_PDB 76.2761% -87 - C2 -3HBL - ? -
109 HHSearch 76.1861% -87 - C2 -3HBL - ? -
5 PsiBlast_PDB 75.7261% -86 - C2 -3HB9 - ? -
10 PsiBlast_PDB 75.6461% -85 - C2 -4HNV - ? -
121 HHSearch 59.8042% -72 - C2 -3OUZ 7.1 ?
50 PsiBlast_CBE 58.8845% -75 - C2 -3JZF 9.5 ACCC_ECOLI
74 PsiBlast_CBE 58.7045% -76 - C2 -2V5A 6.0 ACCC_ECOLI
61 PsiBlast_CBE 58.6545% -75 - C2 -2W6Z 4.2 ACCC_ECOLI
64 PsiBlast_CBE 58.5445% -76 - C2 -2W6P 5.5 ACCC_ECOLI
49 PsiBlast_CBE 58.5445% -75 - C2 -3JZI 8.9 ACCC_ECOLI
68 PsiBlast_CBE 58.3045% -76 - C2 -2W6N 4.9 ACCC_ECOLI
78 PsiBlast_CBE 58.2745% -75 - C2 -2V58 6.1 ACCC_ECOLI
63 PsiBlast_CBE 58.2545% -75 - C2 -2W6Q 4.1 ACCC_ECOLI
59 PsiBlast_CBE 58.0245% -76 - C2 -2W70 3.8 ACCC_ECOLI
72 PsiBlast_CBE 57.9745% -78 - C2 -2VR1 4.7 ACCC_ECOLI
70 PsiBlast_CBE 57.9245% -74 - C2 -2W6M 3.5 ACCC_ECOLI
56 PsiBlast_CBE 57.9245% -75 - C2 -2W71 6.5 ACCC_ECOLI
57 PsiBlast_CBE 57.8845% -76 - C2 -2W71 6.4 ACCC_ECOLI
48 PsiBlast_CBE 57.8445% -73 - C2 -2VPQ 5.4 ?
77 PsiBlast_CBE 57.7945% -72 - C2 -2V58 6.1 ACCC_ECOLI
67 PsiBlast_CBE 57.7445% -73 - C2 -2W6N 5.0 ACCC_ECOLI
76 PsiBlast_CBE 57.7045% -75 - C2 -2V59 5.0 ACCC_ECOLI
69 PsiBlast_CBE 57.6945% -76 - C2 -2W6M 3.3 ACCC_ECOLI
87 PsiBlast_CBE 57.6644% -76 - C2 -3G8D 5.1 ACCC_ECOLI
89 PsiBlast_CBE 57.6144% -76 - C2 -3RV4 8.2 ACCC_ECOLI
66 PsiBlast_CBE 57.5745% -77 - C2 -2W6O 3.9 ACCC_ECOLI
62 PsiBlast_CBE 57.5745% -75 - C2 -2W6Q 4.2 ACCC_ECOLI
65 PsiBlast_CBE 57.5445% -78 - C2 -2W6O 3.6 ACCC_ECOLI
83 PsiBlast_CBE 57.3945% -75 - C2 -3RUP 6.8 ACCC_ECOLI
17 PsiBlast_PDB 57.3745% -72 - C2 -3JZI 8.4 ACCC_ECOLI
119 HHSearch 57.3045% -69 - C2 -2VPQ 6.0 ?
51 PsiBlast_CBE 57.3045% -73 - C2 -3G8C 6.2 ACCC_ECOLI
75 PsiBlast_CBE 57.2445% -74 - C2 -2V59 5.1 ACCC_ECOLI
58 PsiBlast_CBE 57.2245% -74 - C2 -2W70 3.4 ACCC_ECOLI
14 PsiBlast_PDB 57.2245% -70 - C2 -2VPQ 6.0 ?
85 PsiBlast_CBE 57.0544% -74 - C2 -1DV2 4.4 ACCC_ECOLI
80 PsiBlast_CBE 56.9545% -75 - C2 -2J9G 5.7 ACCC_ECOLI
84 PsiBlast_CBE 56.9045% -73 - C2 -3RUP 8.0 ACCC_ECOLI
90 PsiBlast_CBE 56.7644% -67 - C2 -2VQD 7.4 ACCC_PSEAE
81 PsiBlast_CBE 56.7645% -76 - C2 -3RV3 6.3 ACCC_ECOLI
86 PsiBlast_CBE 56.6644% -75 - C2 -1DV2 5.8 ACCC_ECOLI
82 PsiBlast_CBE 56.6545% -76 - C2 -3RV3 8.0 ACCC_ECOLI
79 PsiBlast_CBE 56.3245% -76 - C2 -2J9G 7.1 ACCC_ECOLI
18 PsiBlast_PDB 55.8245% -73 - C2 -3G8C 6.2 ACCC_ECOLI
15 PsiBlast_PDB 55.3448% -77 - C2 -4RZQ 4.0 ACCC_HAEIN
118 HHSearch 50.1137% -69 - C2 -3VA7 2.1 ?
101 PsiBlast_CBE 49.7638% -72 - C2 -3VA7 2.1 ?