@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1078: (2016-03-21 )
MKVKKAVIPAAGLGTRFLPATKAMPKEILPIVDKPTIQFIVEEAVASGIEDILIVTGKGKRAIEDHFDSVPELENNLREKNKLDLLHLVEETTNINLHFIRQSKPKGLGDAILQAKGFIGNEPFVVMLGDDIVQSKTPCAKQLIDQYEKTHSSVIGVQNVPREETYRYGIIDPDKEVSDRLYNVTGFVEKPNVEDAPSNLAILGRYLLTPEIFKYLETQEAGSGGEIQLTDAINRLNEIQPVFAYDFEGERFDVGDKFGFIETTLKFALKHPEIKDDVRDLIIRLGDELK

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GUD_A_13(2PA4)
?
[Raw transfer]




UPG_A_5(3JUK)
?
[Raw transfer]




GUD_B_14(2PA4)
?
[Raw transfer]




UPG_A_5(3JUK)
?
[Raw transfer]




GUD_C_15(2PA4)
?
[Raw transfer]




GUD_D_16(2PA4)
?
[Raw transfer]




GUD_A_13(2PA4)
?
[Raw transfer]




UPG_D_17(3JUK)
?
[Raw transfer]




UPG_B_9(3JUK)
?
[Raw transfer]




UPG_C_13(3JUK)
?
[Raw transfer]




TTP_A_5(1MC3)
RMLA2_ECOLI
[Raw transfer]




TTP_E_5(2GGQ)
?
[Raw transfer]




GOL_A_3(3PNN)
?
[Raw transfer]




G1P_B_6(1H5R)
RMLA1_ECOLI
[Raw transfer]




TMP_B_8(1H5S)
RMLA1_ECOLI
[Raw transfer]




MES_M_13(1FXJ)
GLMU_ECOLI
[Raw transfer]




22 PsiBlast_CBE 92.1148% -91 - C1 -2UX8 - ? -
24 PsiBlast_CBE 90.1348% -91 - C1 -2UX8 - ? -
26 PsiBlast_CBE 88.1648% -90 - C1 -2UX8 - ? -
27 PsiBlast_CBE 87.9848% -91 - C1 -2UX8 - ? -
25 PsiBlast_CBE 87.8148% -92 - C1 -2UX8 - ? -
23 PsiBlast_CBE 87.6248% -89 - C1 -2UX8 - ? -
21 PsiBlast_CBE 87.6248%-106 - C1 -2UX8 - ? -
1 PsiBlast_PDB 85.0644% -97 - C1 -3JUJ - ? -
31 PsiBlast_CBE 83.9339% -96 - C1 -2PA4 6.9 ?
32 PsiBlast_CBE 83.2939% -90 - C1 -2PA4 6.4 ?
3 PsiBlast_PDB 83.2139% -92 - C1 -2PA4 6.8 ?
43 HHSearch 83.1438% -89 - C1 -2PA4 6.8 ?
33 PsiBlast_CBE 82.5439% -87 - C1 -2PA4 6.0 ?
28 PsiBlast_CBE 82.4244% -95 - C1 -3JUK 8.0 ?
2 PsiBlast_PDB 80.9644% -98 - C1 -3JUK 7.7 ?
29 PsiBlast_CBE 80.5844% -97 - C1 -3JUK 7.8 ?
30 PsiBlast_CBE 79.7344% -96 - C1 -3JUK 7.7 ?
45 HHSearch 79.5044% -97 - C1 -3JUK 7.7 ?
64 Fugue 61.9225% -78 - C1 -1FXO - ? -
11 PsiBlast_PDB 59.5226% -73 - C1 -1MP4 - RMLA_SALTY -
5 PsiBlast_PDB 53.8931% -80 - C1 -2GGQ 5.1 ?