@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1091: (2016-03-21 )
LHKLSVVIAVYNVSEYIEACLTSVLEQNYKNVELIIVNDGSTDDTFQKVEKLVDGHTNVILIDQENQGVSAVRNNGVKAATGDYLGFVDGDDIIAKDMFQKMMDSFEMSDADMVTIGVARLSGDKVYPSTLHERYMVEKKEATTIEETPALLYDTTSWNKVFKKSFWDKHHLEFPEGQMYEDIALMIPAFLYAEKVNIIPDVGYYWRSREGGAKSITQRRNDIAMVNDRLLALKKVNQVLNEKNIQGDLRYQNERKNFEIDLFSMIEWAFLAPKDYYLALQPLIKNYVEQEMKTTALNDIPKEKKRLFKALLANNRPAFLLNSYIYFGKKAVKKITK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UDP_B_8(2Z87)
CHS_ECOLX
[Raw transfer]
26 Fugue 83.8420% -81 - C1 -2Z86 - CHS_ECOLX -
30 Fugue 73.4015% -74 - C1 -2D7I - GLT10_HUMAN -
40 HHSearch 70.7215% -86 - C1 -2D7I - GLT10_HUMAN -
34 Fugue 69.4217% -34 - C1 -4MND - DIPPS_ARCFU -
27 Fugue 67.4218% -59 - C1 -1QG8 - SPSA_BACSU -
23 PsiBlast_CBE 67.3835%-122 - C1 -2Z86 - CHS_ECOLX -
21 PsiBlast_CBE 67.3335%-115 - C1 -2Z87 3.4 CHS_ECOLX
1 PsiBlast_PDB 67.2635%-123 - C1 -2Z86 - CHS_ECOLX -
22 PsiBlast_CBE 66.1635%-116 - C1 -2Z86 - CHS_ECOLX -
24 PsiBlast_CBE 65.8835%-118 - C1 -2Z86 - CHS_ECOLX -
2 PsiBlast_PDB 65.8335%-122 - C1 -2Z87 - CHS_ECOLX -
29 Fugue 63.6511% -64 - C1 -1XHB - GALT1_MOUSE -
5 PsiBlast_PDB 63.1426%-124 - C1 -1QGQ - SPSA_BACSU -
6 PsiBlast_PDB 62.4626%-129 - C1 -1QGS - SPSA_BACSU -
4 PsiBlast_PDB 62.4326%-124 - C1 -1QG8 - SPSA_BACSU -
7 PsiBlast_PDB 61.9226%-123 - C1 -1H7L - SPSA_BACSU -
8 PsiBlast_PDB 61.8226%-121 - C1 -1H7Q - SPSA_BACSU -
44 HHSearch 61.5217% -79 * C1 *3CKJ - GPGS_MYCPA -
35 HHSearch 60.9324% -51 - C1 -3BCV - ? -
28 Fugue 60.6214% -47 - C1 -3CKJ - GPGS_MYCPA -