@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1100: (2016-03-21 )
MSKASKQTTYRVDGMSCTNCAGKFEKNVKNLEGVTDAKVNFGAGKISVYGETSISQIEKAGAFENLRVTDEKDYSSKPAKKESFLKKNWHLVVSIIFIILAFISQNISGEDSTTTIILYVIAIVVGGFNLFKEGFANLIKLDFTMESLMTIAIIGASIIGEWAEGSIVVILFAFSEVLERYSMDKARQSIRSLMDIAPKEALIRRDDVEQMIAVSDIQIGDIMIIKPGQKIAMDGVVIKGYSAINQSAITGESIPVEKKVDDEVFAGTLNEEGLLEVKVTKHVEDTTISKIIHLVEEAQGERAPAQAFVDKFAKYYTPTIMLIALLVVVVPPLFFGGDWDTWVYQGLSLLVVGCPCSLVISTPVSIVSAIGNSAKNGVLVKGGIYLEEIGGLQAIAFDKTGTLTKGKPVVTDFIPYSEHMDEQNSLSIITALETMSQHPLASAIISKAMIDNVDYKSIEIDNFSSITGKGVKGEVNGITYYIGSSKLFESSLEKSQSISQTYQSLQKQGKTAMLFGTESNILAIIAVADEVRESSKEVIAQLHKLGIAHTIMLTGDNNDTAQFIGKEIGVSDIKAELMPEDKLTYIKELKQTYGKVAMIGDGVNDAPALAASTVGIAMGGAGTDTALETADVALMGDDLKKLPFIVNLSRKTLKIIKQNITFSLGIKLLALLLVLPGWLTLWIAIVADMGATLLVTLNGLRLMKVKK

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_5(2YJ4)
?
[Raw transfer]



ATP_B_4(2YJ5)
?
[Raw transfer]



ACP_A_3(3A1E)
COPA_ARCFU
[Raw transfer]



ACP_B_5(3A1C)
?
[Raw transfer]



ACP_B_5(3A1E)

[Raw transfer]



ACP_A_3(3A1C)
?
[Raw transfer]



ACP_A_3(3A1C)
?
[Raw transfer]



ADP_A_3(3A1D)
?
[Raw transfer]



ADP_B_5(3A1D)
?
[Raw transfer]



A99_A_3(2YJ6)
?
[Raw transfer]



MGF_A_3(4BEV)
?
[Raw transfer]
61 Fugue 85.6433% -90 - C3 -3RFU - ? -
2 PsiBlast_PDB 85.5637% -95 - C3 -4UMW - ? -
7 PsiBlast_PDB 84.9532% -96 - C3 -4BYG - ? -
40 HHSearch 84.7830% -82 - C3 -3J09 - COPA_ARCFU -
60 Fugue 84.7437% -77 - C3 -4UMW - ? -
5 PsiBlast_PDB 84.1632% -93 - C3 -3RFU - ? -
6 PsiBlast_PDB 84.0732% -95 - C3 -4BEV 2.4 ?
23 PsiBlast_CBE 83.8432% -93 - C3 -3RFU - ? -
22 PsiBlast_CBE 83.8132% -93 - C3 -3RFU - ? -
21 PsiBlast_CBE 83.7732% -93 - C3 -3RFU - ? -
1 PsiBlast_PDB 83.0037% -88 - C3 -4UMV - ? -
3 PsiBlast_PDB 81.5032% -72 - C3 -3J09 - COPA_ARCFU -
41 HHSearch 76.0632% -82 - C3 -3J08 - COPA_ARCFU -
4 PsiBlast_PDB 74.2733% -74 - C3 -3J08 - COPA_ARCFU -
43 HHSearch 72.0522% -65 - C3 -2ZXE - ? -
63 Fugue 71.4820% -66 - C3 -3B8E - AT1A1_PIG -
65 Fugue 64.7822% -67 - C1 -1SU4 - AT2A1_RABIT -
44 HHSearch 63.7021% 32 - C- -3IXZ - ATP4A_PIG -
14 PsiBlast_PDB 62.4424% -75 - C3 -1MHS - PMA1_NEUCR -
42 HHSearch 61.8023% -65 - C3 -1MHS - PMA1_NEUCR -
25 PsiBlast_CBE 58.2437% -73 - C3 -3A1C 7.1 ?
12 PsiBlast_PDB 57.5537% -72 - C3 -3A1E 5.4 COPA_ARCFU
11 PsiBlast_PDB 57.2937% -71 - C3 -3A1D 5.5 ?
47 HHSearch 57.1838% -72 - C3 -3A1C 5.8 ?
24 PsiBlast_CBE 57.1337% -72 - C3 -3A1D 4.7 ?
26 PsiBlast_CBE 56.8237% -72 - C3 -3A1E 6.3
10 PsiBlast_PDB 56.4737% -71 - C3 -3A1C 5.8 ?
30 PsiBlast_CBE 49.2533% -55 - C3 -2YJ4 6.3 ?
29 PsiBlast_CBE 48.0733% -61 - C3 -2YJ5 5.4 ?
18 PsiBlast_PDB 47.3533% -59 - C3 -2YJ6 4.9 ?