@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1131: (2016-03-21 )
MIDKRLFQLVEKKSLVLLILFRVLSLGLMIGLWLVFAQQLTHYLEGQNVDWLWLIGTVLVVLVGKAILTKLAEKQIYQASAELRLSMRRAVMEKAFRLGNNEGQLPASTLTQLAVDGIEQLEIYYSRFLPQLFYCLIASLMIFGSLVGFAWQPAIVLLICMPMIPIVIMAVMKIAKRILSGYWSDYTNLGTKFHENLSGLSILKAYDQDKYKQEEIVSDAERFRKATMSLLSMQLNSITIMDIISYSGAALGIGMSLIMFTNGTISMTGMLMFLLLSAEFFIPMRQLGSLFHVAMNGISACSKLFAYLELKEQVYGSVELAKPLEKIEVHHLTYTYEGGKAKALQDVSVHFNKGSFSALVGKSGSGKSTFVRVLLNQLPGYQGEIVWNDVPLASLSGEAIRKQAVLVDNHGYLYANSIRENLLIGNPAANDSDLWNVLEQVSLADFVRKLPEQLNENLEEDGSNLSGGQRQRLLLARALLRQAEVYVFDEITSGVDLESEKIILLVLQELAKEKIVLFISHRLYNVLGADQVLVFDAGKLLEVASPERLQQESNYFKNYFLEEEALLKGGA

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(4PL0)
MCJD_ECOLX
[Raw transfer]



ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]



ANP_B_6(4PL0)
MCJD_ECOLX
[Raw transfer]



ADP_A_2(5DGX)
?
[Raw transfer]



ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]
2 PsiBlast_PDB 91.9722%-123 - C1 -3QF4 - Y288_THEMA -
4 PsiBlast_PDB 91.7022%-117 - C1 -4Q4H - Y288_THEMA -
3 PsiBlast_PDB 91.1622%-120 - C1 -4Q4A - Y288_THEMA -
8 PsiBlast_PDB 88.7821%-117 - C1 -4Q4J - Y288_THEMA -
37 HHSearch 82.9721%-117 - C1 -3WMG - ? -
55 Fugue 80.9321%-111 - C1 -3B60 - MSBA_SALTY -
34 HHSearch 79.8022%-107 * C1 *3B60 - MSBA_SALTY -
36 HHSearch 75.9819%-115 - C1 -3ZDQ - ABCBA_HUMAN -
57 Fugue 74.5221%-116 - C1 -4F4C - PGP1_CAEEL -
12 PsiBlast_PDB 73.7826% -94 - C1 -3B60 - MSBA_SALTY -
16 PsiBlast_PDB 70.3125%-108 - C1 -4F4C - PGP1_CAEEL -
6 PsiBlast_PDB 59.2927% -98 - C1 -2ONJ 5.8 Y1866_STAAM
5 PsiBlast_PDB 58.9627% -98 - C1 -2HYD 4.4 Y1866_STAAM
14 PsiBlast_PDB 57.7327% -86 - C1 -4S0F - ? -
29 PsiBlast_CBE 57.2131% -99 - C1 -4AYX - ABCBA_HUMAN -
13 PsiBlast_PDB 56.1827% -94 - C1 -4RY2 - ? -
31 PsiBlast_CBE 55.5631% -95 - C1 -3ZDQ - ABCBA_HUMAN -
30 PsiBlast_CBE 54.6531% -97 - C1 -4AYT - ABCBA_HUMAN -
27 PsiBlast_CBE 53.8032%-108 - C1 -3VX4 - ? -
43 HHSearch 53.6533% -93 - C1 -1MV5 - LMRA_LACLA -
33 PsiBlast_CBE 50.2031%-105 - C1 -4PL0 6.0 MCJD_ECOLX
32 PsiBlast_CBE 49.8231%-103 - C1 -4PL0 6.0 MCJD_ECOLX
15 PsiBlast_PDB 48.8634%-102 - C1 -5DGX 6.5 ?