@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1132: (2016-03-21 )
MSEWTIIGWLLKFVKPLRGKMILAILLGIISNLSVIMISLIGTYGIIAVILQQPLNPYKWLFVMVACGVVRGLARYLEQYLNHDIAFRLLAIIRERIFATLRKLGPARLSGKKSGDLVAAITTDVEALEVFFAHTISPVFIALGTTIATVGFLASYDVGLAIILLVGQIMVGVVLPMISYKRNKKIGTAYQQAFVGLNQMVMENIASLQDIFQFKLGEERLRKLETQGEKLNRQYKKRIRQGSELQILGEWVLIGTATIILVLGSLSQLPLETVLIGTVLSLSSFGSVLALNALGTALLTTFASGKRLYALTEEKPVVLFNGQLELSDFESAELDKVSFSHDGKQPLLNELSLALPKGKWLGIGGESGSGKSTLVKLLMRYWDPDGQVKLNNNELPKITESSLHRLEGVMEQRTFLFEDTLGNNIRLGKKDATLEEVKEAARKAAIDTWIETLPEGYETIIGGQSRNLSDGERQRIGLARLFLHDAPLLLLDEPTSNLDYINEQAILNTLRSEIQDKTVLVISHRATTLDLAEEQLFIENGALKRAAK

Atome Classification :

(43 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_H_8(2FGK)

[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ANP_A_3(4PL0)
MCJD_ECOLX
[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ANP_B_6(4PL0)
MCJD_ECOLX
[Raw transfer]




AGS_A_3(4S0F)
?
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




AGS_B_4(4S0F)
?
[Raw transfer]




ADP_A_2(5DGX)
?
[Raw transfer]




2 PsiBlast_PDB 90.4527% -99 - C3 -2ONJ - Y1866_STAAM -
1 PsiBlast_PDB 89.5027% -99 - C3 -2HYD - Y1866_STAAM -
4 PsiBlast_PDB 88.2527% -93 - C3 -3QF4 - Y288_THEMA -
5 PsiBlast_PDB 86.3027% -96 - C3 -4Q4A - Y288_THEMA -
11 PsiBlast_PDB 84.8827% -85 - C3 -3B60 - MSBA_SALTY -
6 PsiBlast_PDB 84.7427% -93 - C3 -4Q4H - Y288_THEMA -
14 PsiBlast_PDB 83.5826% -85 - C3 -4AYT - ABCBA_HUMAN -
15 PsiBlast_PDB 83.5626% -88 - C3 -4AYX - ABCBA_HUMAN -
7 PsiBlast_PDB 83.5026% -91 - C3 -4Q4J - Y288_THEMA -
16 PsiBlast_PDB 80.4326% -86 - C3 -3ZDQ - ABCBA_HUMAN -
76 HHSearch 78.4924% -77 - C3 -3B60 - MSBA_SALTY -
66 Fugue 78.3624% -79 - C3 -3B60 - MSBA_SALTY -
78 HHSearch 77.0623% -82 - C3 -3ZDQ - ABCBA_HUMAN -
79 HHSearch 75.8322% -93 - C3 -3WMG - ? -
3 PsiBlast_PDB 74.2827% -98 - C3 -4A82 - Y1866_STAAM -
69 Fugue 74.2322% -91 - C3 -4F4C - PGP1_CAEEL -
9 PsiBlast_PDB 63.5127% 42 - C- -3B5Y - MSBA_SALTY -
10 PsiBlast_PDB 63.5027% 42 - C- -3B5Z - MSBA_SALTY -
12 PsiBlast_PDB 62.6926% 42 - C- -3B5W - MSBA_ECOLI -
13 PsiBlast_PDB 57.3237% -60 - C3 -4Q7L - Y288_THEMA -
45 PsiBlast_CBE 56.5535% -72 - C3 -2FGJ 6.1
52 PsiBlast_CBE 56.4835% -70 - C3 -1XEF 5.7 HLYBP_ECOLX
34 PsiBlast_CBE 56.3435% -65 - C3 -2FGK 5.6 HLYBP_ECOLX
32 PsiBlast_CBE 56.1835% -67 - C3 -2FGK 5.3
48 PsiBlast_CBE 55.8435% -71 - C3 -2FGJ 6.3 HLYBP_ECOLX
50 PsiBlast_CBE 55.6135% -71 - C3 -1XEF 6.3
35 PsiBlast_CBE 55.5435% -64 - C3 -2FGK 6.1 HLYBP_ECOLX
51 PsiBlast_CBE 55.4935% -72 - C3 -1XEF 6.0 HLYBP_ECOLX
36 PsiBlast_CBE 55.4435% -66 - C3 -2FFB 4.8
53 PsiBlast_CBE 54.9935% -70 - C3 -1XEF 5.5 HLYBP_ECOLX
31 PsiBlast_CBE 54.8435% -69 - C3 -2PMK 6.0
37 PsiBlast_CBE 54.5734% -69 - C3 -3B5J 5.0
33 PsiBlast_CBE 53.9935% -66 - C3 -2FGK 5.8 HLYBP_ECOLX
29 PsiBlast_CBE 53.8235% -66 - C3 -2FF7 5.3
49 PsiBlast_CBE 53.4135% -68 - C3 -2FFA 4.8
47 PsiBlast_CBE 53.4035% -70 - C3 -2FGJ 6.2 HLYBP_ECOLX
46 PsiBlast_CBE 52.9235% -71 - C3 -2FGJ 5.9 HLYBP_ECOLX
56 PsiBlast_CBE 51.4732% -61 - C3 -5DGX 4.1 ?
93 HHSearch 51.4334% -61 - C3 -2FF7 5.4
24 PsiBlast_CBE 50.9534% -60 - C3 -4S0F 5.1 ?
43 PsiBlast_CBE 50.1636% -57 - C3 -4PL0 6.2 MCJD_ECOLX
23 PsiBlast_CBE 49.8034% -59 - C3 -4S0F 3.5 ?
44 PsiBlast_CBE 49.4536% -59 - C3 -4PL0 6.1 MCJD_ECOLX