@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1166: (2016-03-22 )
MNSFQIKTKVAFGTNSLQVLKEIKNKNVWIICDRFLADGEGLQGLIGQLDASNNVHIFTDVVPDPPISKVAGGVSEAGKIQPQVMIAFGGGSAIDTAKGIYYFAKRLEKINISTFIAIPTTSGTGSEVTAATVITDPTTKIKYPLFLDELIPDMAILDAQLVVTVPPAITANTGMDVLTHAIEAYVSKDASDYTDALGEKSVQLTLRFLTSCYDDGRNLADREKMHNASTMAGMAFNCANLGLNHSIAHQLGAQFHVPHGLANAILLDAVIRFNAFKNRETEQKYAEMARICGIASRSDSNETAVRLLRERIVAMMEHMQMPRTLTDAGVAKEKVYAKMDEIATNALKDACLPTSPTTPTHQELKEILEQII

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_B_7(2BL4)
FUCO_ECOLI
[Raw transfer]




NAD_A_4(2BI4)
FUCO_ECOLI
[Raw transfer]




NAD_A_4(2BL4)
FUCO_ECOLI
[Raw transfer]




NAD_B_7(2BI4)
FUCO_ECOLI
[Raw transfer]




APR_A_7(1RRM)
FUCO_ECOLI
[Raw transfer]




APR_A_7(1RRM)
FUCO_ECOLI
[Raw transfer]




BEN_A_6(3W5S)
?
[Raw transfer]




UNL_A_2(3RF7)
?
[Raw transfer]




51 HHSearch 97.0535% -92 - C2 -3BFJ - DHAT_KLEPN -
50 HHSearch 95.9234% -91 - C2 -1RRM 7.7 FUCO_ECOLI
40 PsiBlast_CBE 95.0632% -92 - C2 -2BL4 7.5 FUCO_ECOLI
41 PsiBlast_CBE 94.5132% -95 - C2 -2BI4 6.5 FUCO_ECOLI
2 PsiBlast_PDB 94.3532% -93 - C2 -2BI4 7.4 FUCO_ECOLI
3 PsiBlast_PDB 94.1832% -92 - C2 -2BL4 7.4 FUCO_ECOLI
48 HHSearch 87.1131% -89 * C2 *3OX4 - ADH2_ZYMMO -
6 PsiBlast_PDB 85.6332% -80 - C2 -4FR2 - ? -
36 PsiBlast_CBE 85.4136% -77 - C2 -3BFJ - DHAT_KLEPN -
39 PsiBlast_CBE 84.6236% -73 - C2 -3BFJ - DHAT_KLEPN -
37 PsiBlast_CBE 84.3936% -73 - C2 -3BFJ - DHAT_KLEPN -
38 PsiBlast_CBE 83.8236% -73 - C2 -3BFJ - DHAT_KLEPN -
1 PsiBlast_PDB 83.7036% -74 - C2 -3BFJ - DHAT_KLEPN -
4 PsiBlast_PDB 82.0333% -72 - C2 -3OWO - ADH2_ZYMMO -
44 PsiBlast_CBE 81.9233% -72 - C2 -3OX4 - ADH2_ZYMMO -
47 PsiBlast_CBE 81.8933% -71 - C2 -3OWO - ADH2_ZYMMO -
21 PsiBlast_CBE 81.7736% -72 - C2 -3BFJ - DHAT_KLEPN -
45 PsiBlast_CBE 81.6333% -71 - C2 -3OWO - ADH2_ZYMMO -
35 PsiBlast_CBE 81.5736% -73 - C2 -3BFJ - DHAT_KLEPN -
43 PsiBlast_CBE 80.9133% -69 - C2 -3OX4 - ADH2_ZYMMO -
7 PsiBlast_PDB 80.3134% -74 - C2 -1RRM 7.0 FUCO_ECOLI