@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1168: (2016-03-22 )
MHKIMAINAGSSSLKFQIFTMPGEEVLVKGLIERIGLPDAIFNMSFQNEKIKETRAINDHGKAVEILLEQLKAHQVINDLSEITGVGHRVAHGGEDFVTSCVVTDEVVKGIEAVTNLAPLHNPANIIGIKTFRELLPNAVSVAVFDTAFHQTIPQENFLYALPYELYEKHHIRKYGFHGTSHKYVAGKAAEVLEKPLEKLKIISCHLGNGASVCAIEAGKSVNTSMGFTPNAGLMMGTRSGTIDATIIPYLVDELGYSLDEVMHMMSNESGVLGVSGISSDFRDIEIAAKEGNSRALLTLRMFTGQICNYIGAYASAMNGCDALLFTAGVGENSPLIRQMVTEQLSYLGVTCHVTKNNAGDMIISNDNEAVKVCIIPTNEELMIARDVEKYAKQTIG

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AQP_A_4(4FWN)
TDCD_SALTY
[Raw transfer]




ATP_A_6(4FWM)
TDCD_SALTY
[Raw transfer]




B4P_A_2(2E1Z)
TDCD_SALTY
[Raw transfer]




B4P_A_2(2E20)
TDCD_SALTY
[Raw transfer]




ANP_E_5(1X3N)
TDCD_SALTY
[Raw transfer]




GTP_A_4(4FWQ)
TDCD_SALTY
[Raw transfer]




ADP_E_5(1G99)
ACKA_METTE
[Raw transfer]




ADP_E_5(1G99)
ACKA_METTE
[Raw transfer]




ADP_E_5(1G99)
ACKA_METTE
[Raw transfer]




CTP_A_6(4FWS)
TDCD_SALTY
[Raw transfer]




ADP_F_6(1G99)
ACKA_METTE
[Raw transfer]




GDP_A_4(4FWP)
TDCD_SALTY
[Raw transfer]




AMP_B_8(4IJN)
ACKA_MYCS2
[Raw transfer]




ADP_C_3(1X3M)
TDCD_SALTY
[Raw transfer]




AMP_A_4(4IJN)
ACKA_MYCS2
[Raw transfer]




APC_A_3(4IZ9)
ACKA_MYCA1
[Raw transfer]




ADP_E_5(1TUU)
ACKA_METTE
[Raw transfer]




AMP_A_3(4FWK)
TDCD_SALTY
[Raw transfer]




AMP_F_6(1TUU)
ACKA_METTE
[Raw transfer]




ADP_B_5(1TUY)
ACKA_METTE
[Raw transfer]




5GP_A_5(4FWO)
TDCD_SALTY
[Raw transfer]




ADP_A_4(1TUY)
ACKA_METTE
[Raw transfer]




C5P_A_4(4FWR)
TDCD_SALTY
[Raw transfer]




PGE_B_6(3R9P)
ACKA_MYCPA
[Raw transfer]




PGE_A_5(3R9P)
ACKA_MYCPA
[Raw transfer]




EDO_A_2(4FWL)
TDCD_SALTY
[Raw transfer]




PGE_A_5(3R9P)
ACKA_MYCPA
[Raw transfer]




EDO_A_2(4FWQ)
TDCD_SALTY
[Raw transfer]




ACY_B_7(1TUY)
ACKA_METTE
[Raw transfer]




46 HHSearch 98.4553%-113 * C6 *2IIR - ACKA_THEMA -
1 PsiBlast_PDB 98.0752%-114 - C6 -2IIR - ACKA_THEMA -
23 PsiBlast_CBE 94.7349%-116 - C6 -1G99 6.3 ACKA_METTE
4 PsiBlast_PDB 94.7149%-109 - C6 -1G99 5.7 ACKA_METTE
3 PsiBlast_PDB 94.6649%-114 - C6 -1TUY 4.9 ACKA_METTE
43 HHSearch 94.6349%-108 - C6 -1G99 5.7 ACKA_METTE
33 Fugue 94.5149%-108 - C6 -1G99 5.7 ACKA_METTE
22 PsiBlast_CBE 94.4049%-115 - C6 -1TUU 4.3 ACKA_METTE
2 PsiBlast_PDB 93.5349%-109 - C6 -1TUU 5.8 ACKA_METTE
21 PsiBlast_CBE 93.0249%-111 - C6 -1TUY 3.9 ACKA_METTE
11 PsiBlast_PDB 87.4242%-104 - C6 -2E20 10.8 TDCD_SALTY
15 PsiBlast_PDB 87.3642%-106 - C6 -4FWP 6.0 TDCD_SALTY
17 PsiBlast_PDB 87.3342%-104 - C6 -4FWR 4.1 TDCD_SALTY
12 PsiBlast_PDB 87.1742%-107 - C6 -4FWK 5.4 TDCD_SALTY
5 PsiBlast_PDB 86.9642%-106 - C6 -4FWL 2.1 TDCD_SALTY
8 PsiBlast_PDB 86.6042%-105 - C6 -1X3N 5.9 TDCD_SALTY
13 PsiBlast_PDB 86.5942%-104 - C6 -4FWN 7.3 TDCD_SALTY
18 PsiBlast_PDB 86.5542%-105 - C6 -4FWS 5.8 TDCD_SALTY
28 PsiBlast_CBE 86.5341%-110 - C6 -4IJN 6.3 ACKA_MYCS2
7 PsiBlast_PDB 86.3842%-103 - C6 -1X3M 6.0 TDCD_SALTY
27 PsiBlast_CBE 86.3441%-110 - C6 -4IJN 6.2 ACKA_MYCS2
10 PsiBlast_PDB 86.3342%-104 - C6 -2E1Z 10.5 TDCD_SALTY
16 PsiBlast_PDB 86.3142%-103 - C6 -4FWQ 6.3 TDCD_SALTY
32 PsiBlast_CBE 86.2040%-109 - C6 -3R9P 2.0 ACKA_MYCPA
47 HHSearch 86.1241%-104 - C6 -3R9P 2.0 ACKA_MYCPA
14 PsiBlast_PDB 86.1242%-107 - C6 -4FWO 5.9 TDCD_SALTY
6 PsiBlast_PDB 86.0242%-104 - C6 -4FWM 6.2 TDCD_SALTY
29 PsiBlast_CBE 85.1039%-107 - C6 -4IZ9 5.6 ACKA_MYCA1
31 PsiBlast_CBE 84.1540%-108 - C6 -3R9P 1.9 ACKA_MYCPA