@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1171: (2016-03-22 )
MQKVSFKTDLYIGQGATDRLLDFKDKQIFIVTDPFMVSSGMINAITDKIDQSNTYTIFSEIIPDPPIENVVAGIEVLNECDANLMIAIGGGSAIDAAKAMKFFGQKLGTVRAMPFIVIPTTSGTGSEVTSFSVITNKEKAIKYPLITDAILPDEAILDADLVKSVPPAITADTGMDVLTHALEAYVSTKANDYSDAMAEKVIQLVFTYLERAYKDGNDLEAREKMHNASCLAGMAFNITSLGLNHGIAHTAGAKFKIPHGRMNTLLLPHVISYNAGITSDFGNNPDNRAAERYTAIAKLLKMPASNTRLGVRSLINAIKQLQKKLNMPTTLTECGISRTDLNENIAQIAEGALNDGCTATNPRTPTETDVSAILEKMLA

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_B_7(2BL4)
FUCO_ECOLI
[Raw transfer]




NAD_A_4(2BI4)
FUCO_ECOLI
[Raw transfer]




NAD_A_4(2BL4)
FUCO_ECOLI
[Raw transfer]




NAD_B_7(2BI4)
FUCO_ECOLI
[Raw transfer]




APR_A_7(1RRM)
FUCO_ECOLI
[Raw transfer]




APR_A_7(1RRM)
FUCO_ECOLI
[Raw transfer]




BEN_A_6(3W5S)
?
[Raw transfer]




UNL_A_2(3RF7)
?
[Raw transfer]




60 HHSearch 95.6634% -92 - C3 -1RRM 7.5 FUCO_ECOLI
59 HHSearch 92.9833% -98 * C3 *3OX4 - ADH2_ZYMMO -
61 HHSearch 90.8534% -94 - C3 -3BFJ - DHAT_KLEPN -
44 PsiBlast_CBE 88.9333% -93 - C3 -3BFJ - DHAT_KLEPN -
43 PsiBlast_CBE 88.7133% -92 - C3 -3BFJ - DHAT_KLEPN -
4 PsiBlast_PDB 88.5633% -90 - C3 -2BL4 6.5 FUCO_ECOLI
46 PsiBlast_CBE 88.5433% -91 - C3 -3BFJ - DHAT_KLEPN -
27 PsiBlast_CBE 88.2833% -90 - C3 -2BL4 6.0 FUCO_ECOLI
3 PsiBlast_PDB 88.1733% -91 - C3 -2BI4 7.2 FUCO_ECOLI
28 PsiBlast_CBE 87.9533% -90 - C3 -2BI4 6.0 FUCO_ECOLI
5 PsiBlast_PDB 87.9233% -86 - C3 -1RRM 7.5 FUCO_ECOLI
47 PsiBlast_CBE 87.8833% -89 - C3 -3BFJ - DHAT_KLEPN -
29 PsiBlast_CBE 87.7833% -92 - C3 -3BFJ - DHAT_KLEPN -
6 PsiBlast_PDB 87.7633% -92 - C3 -3BFJ - DHAT_KLEPN -
45 PsiBlast_CBE 87.3233% -91 - C3 -3BFJ - DHAT_KLEPN -
1 PsiBlast_PDB 87.0533% -87 - C3 -3OWO - ADH2_ZYMMO -
26 PsiBlast_CBE 87.0233% -84 - C3 -3OWO - ADH2_ZYMMO -
24 PsiBlast_CBE 86.5733% -86 - C3 -3OWO - ADH2_ZYMMO -
7 PsiBlast_PDB 86.5031% -95 - C3 -4FR2 - ? -
2 PsiBlast_PDB 86.4933% -86 - C3 -3OX4 - ADH2_ZYMMO -
13 PsiBlast_PDB 40.1330% -65 - C3 -3W5S 3.6 ?