@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1201: (2016-03-22 )
MGKVMLIGAGPGDAQLLTVKGLAALQKADVIVYDRLVEPAMLQERKASCKLIYVGKEPLHHPIPQDEIERILVREAATNELVVRLKAGDPYVFGRGGEEGETLHKAGIPFEVIPGITSAIGGLAYAGIPVTHRDFASSFHVITGHLKKGRDPLDWEALARLEGTLVFLMGMTNLPNICANLLEHGQKPETGVAIVQWATRGKQLTVTGNLQTIEQKVAESGISSPALIVVGDVVSLRPQLNFFEEMPLFHTKVLLPRARAGKSMLAEQIRDLGGEVTMYPNIQVLDVAPTKTKEQLSEVSELLFTSKEAVERFFDYLAKLDLDIRSLKNSHLTAIGKQTKEAFSEKGIIPDSFIKRRSTELILEHLPRLQKNVSNLIIGSVVDTTEVNVILADVKAIEMMPLYDMRPVTERPFDLESFEQVCFSSSRSVQNLLDVLTIEEKAILQTKTILSIGRFTSATLASFGMNNFIEAESATPESLIELIQKTKLEGVPQ

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAH_F_6(1V9A)
?
[Raw transfer]




SAH_D_4(1PJS)
CYSG_SALTY
[Raw transfer]




SAH_F_6(1PJS)
CYSG_SALTY
[Raw transfer]




SAH_D_4(1PJT)
CYSG_SALTY
[Raw transfer]




SAH_A_2(2YBO)
?
[Raw transfer]




SAH_E_5(1V9A)
?
[Raw transfer]




SAH_A_2(2YBO)
?
[Raw transfer]




SAH_B_7(1PJQ)
CYSG_SALTY
[Raw transfer]




UP2_A_3(2YBQ)
?
[Raw transfer]




SAH_E_5(1PJT)
CYSG_SALTY
[Raw transfer]




23 PsiBlast_CBE 95.3150%-112 - C3 -1PJQ 8.5 CYSG_SALTY
21 PsiBlast_CBE 94.9350%-111 - C3 -1PJT 7.8 CYSG_SALTY
5 PsiBlast_PDB 94.7747%-115 - C3 -2YBQ 8.5 ?
42 HHSearch 94.6149%-117 - C3 -2YBO 8.1 ?
22 PsiBlast_CBE 94.2650%-113 - C3 -1PJS 8.1 CYSG_SALTY
4 PsiBlast_PDB 94.1747%-114 - C3 -2YBO 8.1 ?
1 PsiBlast_PDB 92.8950%-115 - C3 -1PJT 6.1 CYSG_SALTY
32 PsiBlast_CBE 92.6442%-109 - C3 -1S4D - SUMT_PSEDE -
2 PsiBlast_PDB 92.4150%-118 - C3 -1PJQ - CYSG_SALTY -
47 HHSearch 92.3151%-110 - C3 -1PJQ - CYSG_SALTY -
6 PsiBlast_PDB 92.2142%-107 - C3 -1S4D - SUMT_PSEDE -
25 PsiBlast_CBE 91.9542%-115 - C3 -1S4D - SUMT_PSEDE -
29 PsiBlast_CBE 91.7942%-110 - C3 -1S4D - SUMT_PSEDE -
41 HHSearch 91.7341%-104 - C3 -1S4D - SUMT_PSEDE -
26 PsiBlast_CBE 91.7342%-104 - C3 -1S4D - SUMT_PSEDE -
3 PsiBlast_PDB 91.5750%-123 - C3 -1PJS 8.2 CYSG_SALTY
24 PsiBlast_CBE 91.0542%-109 - C3 -1S4D - SUMT_PSEDE -
31 PsiBlast_CBE 90.6042%-104 - C3 -1S4D - SUMT_PSEDE -
28 PsiBlast_CBE 90.5142%-103 - C3 -1S4D - SUMT_PSEDE -
27 PsiBlast_CBE 90.4442%-115 - C3 -1S4D - SUMT_PSEDE -
35 PsiBlast_CBE 88.4141%-115 - C3 -1V9A 8.1 ?
8 PsiBlast_PDB 87.9541%-114 - C3 -1V9A 7.8 ?