@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1223: (2016-03-22 )
MTYVEMKDVSKYYQMGENVVTANDKITFGIKKGEFVVIVGPSGAGKSTVLNILGGMDSASEGKIMVDGQDIAQYNAKQLTKYRRTDVGFVFQFYNLVPNLTAKENVELAAQIAPNALDAETVLTQVGLSHRLDNFPAQLSGGEQQRVAIARALAKAPKLLLCDEPTGALDYDTGKSVLKLLQETCRNTGTTVIVITHNTAITPIADRIIEINNAKVRSIKENPEPMSIDDLEW

Atome Classification :

(47 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ANP_J_5(3C41)
?
[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




ADP_A_3(1F3O)
Y796_METJA
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ADP_B_6(2Q0H)
?
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




22 PsiBlast_CBE 89.4344%-110 - C1 -3TIF 6.6 Y796_METJA
21 PsiBlast_CBE 88.6744%-109 - C1 -1L2T 6.8 Y796_METJA
2 PsiBlast_PDB 88.2744%-104 - C1 -3TIF - Y796_METJA -
120 HHSearch 87.6942% -97 - C1 -3TIF - Y796_METJA -
1 PsiBlast_PDB 87.6044%-107 - C1 -1L2T - Y796_METJA -
3 PsiBlast_PDB 86.9544%-104 - C1 -1F3O 6.1 Y796_METJA
119 HHSearch 83.1439%-101 - C1 -2PCJ - LOLD_AQUAE -
8 PsiBlast_PDB 82.3035%-118 - C1 -3TUZ - METN_ECOLI -
106 HHSearch 82.2435%-100 - C1 -3TUI - METN_ECOLI -
125 Fugue 81.3233%-104 - C1 -3TUZ - METN_ECOLI -
7 PsiBlast_PDB 81.0535%-112 - C1 -3TUI - METN_ECOLI -
112 HHSearch 80.4736% -90 - C1 -1OXX - ? -
6 PsiBlast_PDB 80.4736%-108 - C1 -3DHW - METN_ECOLI -
75 PsiBlast_CBE 79.5033%-123 - C1 -3PUV - MALK_ECOLI -
24 PsiBlast_CBE 79.2935%-112 - C1 -3TUZ - METN_ECOLI -
28 PsiBlast_CBE 79.2035%-112 - C1 -3TUI - METN_ECOLI -
126 Fugue 79.1935% -88 - C1 -1OXS - ? -
66 PsiBlast_CBE 79.1133%-121 * C1 *3PUZ - MALK_ECOLI -
27 PsiBlast_CBE 78.8235%-112 - C1 -3TUI - METN_ECOLI -
26 PsiBlast_CBE 78.6235%-106 - C1 -3TUZ - METN_ECOLI -
13 PsiBlast_PDB 73.2241%-111 - C1 -4YMV 3.8 ?
20 PsiBlast_PDB 73.2139%-118 - C1 -4U00 4.3 ?
31 PsiBlast_CBE 73.0541%-113 - C1 -4YMU 4.2 ?
30 PsiBlast_CBE 72.8241%-110 - C1 -4YMV 3.5 ?
12 PsiBlast_PDB 72.7841%-111 - C1 -4YMU 4.7 ?
44 PsiBlast_CBE 72.7638%-114 - C1 -3C4J 3.0 ?
52 PsiBlast_CBE 71.8738%-111 - C1 -2OLK 3.8 ?
54 PsiBlast_CBE 71.4138%-112 - C1 -2OLK 3.9 ?
57 PsiBlast_CBE 71.2738%-117 - C1 -2OLJ 3.9 ?
55 PsiBlast_CBE 70.4838%-109 - C1 -2OLK 3.8 ?
45 PsiBlast_CBE 70.3138%-107 - C1 -3C4J 4.7 ?
53 PsiBlast_CBE 69.8238%-111 - C1 -2OLK 4.1 ?
56 PsiBlast_CBE 69.7538%-109 - C1 -2OLJ 3.5 ?
46 PsiBlast_CBE 69.6638%-108 - C1 -2Q0H 3.8 ?
47 PsiBlast_CBE 69.3038%-111 - C1 -2Q0H 3.3 ?
87 PsiBlast_CBE 69.0035% -90 - C1 -4MKI 2.2 ECFA2_CALS4
43 PsiBlast_CBE 68.2739%-109 - C1 -3C41 5.1 ?
88 PsiBlast_CBE 67.5935% -90 - C1 -4MKI 2.0 ECFA2_CALS4
42 PsiBlast_CBE 67.3739%-107 - C1 -3C41 3.9 ?
102 PsiBlast_CBE 62.3533% -98 - C1 -2FGJ 4.6
103 PsiBlast_CBE 62.1833% -95 - C1 -2FGJ 4.9 HLYBP_ECOLX
89 PsiBlast_CBE 61.7733% -93 - C1 -2PMK 4.4
90 PsiBlast_CBE 61.1333% -91 - C1 -2FF7 4.2
95 PsiBlast_CBE 60.9633% -96 - C1 -2FGK 5.1 HLYBP_ECOLX
93 PsiBlast_CBE 60.4833% -97 - C1 -2FGK 5.1
96 PsiBlast_CBE 60.2333% -97 - C1 -2FGK 5.4 HLYBP_ECOLX
94 PsiBlast_CBE 59.9933% -94 - C1 -2FGK 5.0 HLYBP_ECOLX