@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1234: (2016-03-22 )
MSSEHIQNKLALLPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDSKTQRLVQEIVDFEYIVTSSNVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITNERHPRLIITRQVKKDKGKYFGPYPNVYAANEVKRILDRLYPLRKCSTLPNKVCLYYHLGQCLAPCVFDVEASKYKEMQDEIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDRDVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPQEIYLPNDVDSEAVQAVVPDTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERNEERTVGAVERLGEAMGIPTPSRVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIKTVEGPDDYATMREVIRRRYWRVLKEGLPMPDLILIDGGKGQIDSAKDVLTNELGLDIPVAGLAKDDKHRTSQLLFGDPLEIVPLERNSQEFYLLQRMQDEVHRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASIEEIKEAGVPLNVAEEVHKHITAFNEKAKNTEQK

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_7(1YD2)
UVRC_THEMA
[Raw transfer]



GOL_A_7(1YD3)
UVRC_THEMA
[Raw transfer]



GOL_A_6(1YD0)
UVRC_THEMA
[Raw transfer]



GOL_A_6(1YD0)
UVRC_THEMA
[Raw transfer]



GOL_A_6(1YD0)
UVRC_THEMA
[Raw transfer]



GOL_A_4(1YD1)
UVRC_THEMA
[Raw transfer]
31 HHSearch 90.9341% -69 - C1 -2NRT - -
5 PsiBlast_PDB 87.6140% -57 - C1 -2NRX - UVRC_THEMA -
25 PsiBlast_CBE 86.8540% -62 - C1 -2NRX - -
3 PsiBlast_PDB 86.6540% -50 - C1 -2NRV - UVRC_THEMA -
2 PsiBlast_PDB 86.5240% -55 - C1 -2NRT - -
6 PsiBlast_PDB 85.7240% -55 - C1 -2NRZ - UVRC_THEMA -
4 PsiBlast_PDB 84.2740% -63 - C1 -2NRW - UVRC_THEMA -
26 PsiBlast_CBE 84.1540% -55 - C1 -2NRV - -
24 PsiBlast_CBE 83.9240% -62 - C1 -2NRZ - -
21 PsiBlast_CBE 68.8675% -46 - C1 -1YD6 - UVRC_GEOKA -
22 PsiBlast_CBE 67.6275% -53 - C1 -1YD6 - UVRC_GEOKA -
57 Fugue 66.5239% -39 - C1 -2NRR - UVRC_THEMA -
34 HHSearch 66.3375% -51 - C1 -1YD6 - UVRC_GEOKA -
1 PsiBlast_PDB 66.0375% -53 - C1 -1YD6 - UVRC_GEOKA -
23 PsiBlast_CBE 64.5875% -55 - C1 -1YD6 - UVRC_GEOKA -
56 Fugue 61.0571% 24 - C1 -3C65 - UVRC_GEOKA -
13 PsiBlast_PDB 58.4345% -48 - C1 -1YD5 - UVRC_THEMA -
10 PsiBlast_PDB 57.7745% -44 - C1 -1YD2 3.3 UVRC_THEMA
11 PsiBlast_PDB 57.4645% -44 - C1 -1YD3 3.4 UVRC_THEMA
9 PsiBlast_PDB 57.2646% -46 - C1 -1YD1 3.1 UVRC_THEMA
8 PsiBlast_PDB 57.0746% -46 - C1 -1YD0 3.2 UVRC_THEMA
36 HHSearch 55.0146% -37 - C1 -1YD0 3.2 UVRC_THEMA
58 Fugue 54.9943% -39 - C1 -1YD0 3.2 UVRC_THEMA