@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1275: (2016-03-23 )
MADYLVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTENDYEPRYITIRGKGPVLKELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQSDKLRVVFNEITKEAVKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIIDREKEINNFKPEEYWTIDGNFLKGKKKFQANFYGVNGKKKKLSTADDVKEVMSAIKGKSFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLGKQGTVGLITYMRTDSTRIADSAILEASNYIKETYGPEFSRNHKRSDKNAKGAQDAHEAIRPTSAMRSPQEVKEYLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDNNGVNFRANGSKIKFHGFMKVYVESNDDNTEEKENILPDLKKGDKVQSESLEQRQHFTQPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFIPTELGEIVNEMIEEYFPEILDVKFTANMESELDEVEHGEVEWVKVIDEFYKRFEPNVIKADAEMEKIEIKDEPAGIDCDLCGAPMVYKMGKYGKFLACSRFPDCRNTKAIVKEIGVTCPKCEKGHVIERKSKKKRIFYGCDRYPDCDYVSWDKPVERACPKCEKRALVEKKLKKGVQVQCTNCDYKESTQQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

T3P_C_3(1CY8)
TOP1_ECOLI
[Raw transfer]



TMP_C_3(1CY2)
TOP1_ECOLI
[Raw transfer]



T3P_E_5(1CY6)
TOP1_ECOLI
[Raw transfer]



TMP_E_5(1CY4)
TOP1_ECOLI
[Raw transfer]



TMP_C_3(1CY1)
TOP1_ECOLI
[Raw transfer]



NACID_Y_1(1MW8)
TOP1_ECOLI
[Raw transfer]
-
NACID_C_3(3PX7)
TOP1_ECOLI
[Raw transfer]
-
NACID_B_2(3PX7)
TOP1_ECOLI
[Raw transfer]
-
11 PsiBlast_PDB 92.0441% -62 - C4 -1MW8 11.0 TOP1_ECOLI
3 PsiBlast_PDB 91.3341% -65 - C4 -1CY6 4.1 TOP1_ECOLI
13 PsiBlast_PDB 91.3041% -69 - C4 -3PX7 15.0 TOP1_ECOLI
12 PsiBlast_PDB 91.2341% -63 - C4 -1MW9 - TOP1_ECOLI -
6 PsiBlast_PDB 90.8941% -65 - C4 -1CY4 3.2 TOP1_ECOLI
8 PsiBlast_PDB 90.8441% -62 - C4 -3PWT - TOP1_ECOLI -
4 PsiBlast_PDB 90.8341% -61 - C4 -1CY8 4.1 TOP1_ECOLI
33 HHSearch 89.8643% -58 - C4 -1MW9 - TOP1_ECOLI -
7 PsiBlast_PDB 89.7441% -62 - C4 -1ECL - TOP1_ECOLI -
10 PsiBlast_PDB 89.3342% -60 - C4 -2GAJ - TOP1_THEMA -
9 PsiBlast_PDB 88.7042% -62 - C4 -2GAI - TOP1_THEMA -
2 PsiBlast_PDB 88.6341% -63 - C4 -1CY2 4.2 TOP1_ECOLI
31 HHSearch 88.6042% -53 - C4 -2GAI - TOP1_THEMA -
5 PsiBlast_PDB 88.5141% -63 - C4 -1CY0 - TOP1_ECOLI -
1 PsiBlast_PDB 88.3841% -64 - C4 -1CY1 3.9 TOP1_ECOLI
57 Fugue 87.4642% -51 - C4 -2GAI - TOP1_THEMA -
58 Fugue 82.1932% -37 - C4 -1GKU - RGYR_ARCFU -
62 Fugue 78.7230% -28 - C4 -4DDU - RGYR_THEMA -
32 HHSearch 77.8923% -35 * C4 *1I7D - TOP3_ECOLI -
34 HHSearch 71.9333% -40 - C4 -1GKU - RGYR_ARCFU -