@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1276: (2016-03-23 )
MEKSVNVIGAGLAGSEAVWQLVNRGVKVDLYEMRPVKQTPAHHTDKFAELVCTNSLRANGLTNAVGVIKEEMRMLDSIIIEAADKASVPAGGALAVDRHEFSGYITDKVKNHPLVTVHTEEVTTIPEGPTIIATGPLTSPALADEIKQLTGEEYLYFYDAAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPMSEEEFNAFYEALVTAETAALKEFEKEVFFEGCMPIEVMAKRGIKTMLFGPLKPVGLEDPKTGKRPYAVLQLRQDDAAGTLYNMVGFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAGQMTGVEGYVESAASGLAAGINAANFIQEKELVVFPTETAIGSLAHYITSASKKSFQPMNVNFGLFPELETKIRAKQERNEKLAERALNAIKKVAEEL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_2(3G5Q)
TRMFO_THET8
[Raw transfer]




FAD_A_2(3G5R)
TRMFO_THET8
[Raw transfer]




FAD_A_2(3G5S)
TRMFO_THET8
[Raw transfer]




FAD_A_2(3G5S)
TRMFO_THET8
[Raw transfer]




30 HHSearch 87.7453% -87 - C1 -3G5S 13.5 TRMFO_THET8
2 PsiBlast_PDB 86.9454% -89 - C1 -3G5R 13.9 TRMFO_THET8
1 PsiBlast_PDB 86.6554% -87 - C1 -3G5Q 13.5 TRMFO_THET8
3 PsiBlast_PDB 86.3852% -88 - C1 -3G5S 13.5 TRMFO_THET8
33 HHSearch 62.9924% -66 - C1 -3CP8 - MNMG_CHLTE -
32 HHSearch 59.5822% -57 - C1 -3CES - MNMG_ECOLI -
59 Fugue 37.3515% -21 - C2 -4GF7 - ? -
58 Fugue 36.6512% -35 * C2 *4J33 - KMO_YEAST -
41 HHSearch 35.9422% -49 - C1 -3RP8 - HPXO_KLEP7 -
48 HHSearch 35.4321% -37 - C1 -3E1T - ? -
49 HHSearch 35.2726% -43 - C1 -3I3L - ? -
34 HHSearch 34.1418% -20 - C1 -3OZ2 - GGR_THEAC -
61 Fugue 34.0514% -24 - C2 -1GCU - BIEA_RAT -
39 HHSearch 32.7016% -25 - C1 -2QA2 - ? -
46 HHSearch 32.4230% 47 - C1 -2XDO - ? -
44 HHSearch 32.3721% -39 - C1 -3NIX - ? -
22 PsiBlast_CBE 32.3539% -59 - C1 -3CP8 - MNMG_CHLTE -
21 PsiBlast_CBE 32.0839% -57 - C1 -3CP8 - MNMG_CHLTE -
4 PsiBlast_PDB 31.9739% -59 - C1 -3CP8 - MNMG_CHLTE -
37 HHSearch 31.9516% -42 - C1 -3C4A - VIOD_CHRVO -