@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1286: (2016-03-23 )
MNRNEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTLHEDGSVSVSDEGRGMPVGMHKTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSSVVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPTTSFNYETLSERLRESAFLLKGMLIELIDERVGMAEAFHFEEGVKNFVEYINEGKDVLHPVASFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDSARAERRVATLMGDKVEPRRQWIEKHVEFSMEDSQNILENENMMVEEAKDI

Atome Classification :

(62 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




DOO_B_12(4KQV)
?
[Raw transfer]




DOO_A_5(4KQV)
?
[Raw transfer]




DOO_B_7(4KFG)
GYRB_ECOLI
[Raw transfer]




ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




DOO_A_5(4KFG)
GYRB_ECOLI
[Raw transfer]




XAM_C_7(4URM)
?
[Raw transfer]




28G_A_2(4MBC)
?
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




1YP_A_2(4LPB)
?
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




28F_A_3(4MB9)
?
[Raw transfer]




2B7_A_2(4MOT)
?
[Raw transfer]




B46_A_2(3G7E)
GYRB_ECOLI
[Raw transfer]




ANP_B_8(1S16)
PARE_ECOLI
[Raw transfer]




NOV_A_3(1KIJ)
?
[Raw transfer]




NOV_A_3(1KIJ)
?
[Raw transfer]




CJC_A_3(4HYM)
?
[Raw transfer]




19X_B_4(4HY1)
?
[Raw transfer]




RLI_A_3(4DUH)
GYRB_ECOLI
[Raw transfer]




RLI_B_4(4DUH)
GYRB_ECOLI
[Raw transfer]




NOV_A_3(1KIJ)
?
[Raw transfer]




NOV_C_7(4URO)
GYRB_STAAU
[Raw transfer]




1EU_A_3(3FV5)
PARE_ECOLI
[Raw transfer]




NOV_B_6(4URO)
GYRB_STAAU
[Raw transfer]




NOV_A_5(4URO)
GYRB_STAAU
[Raw transfer]




1A1_D_11(4HYP)
GYRB_ECOLI
[Raw transfer]




NOV_B_5(4URN)
?
[Raw transfer]




NOV_D_8(4URO)
GYRB_STAAU
[Raw transfer]




TTJ_A_2(5BOD)
?
[Raw transfer]




NOV_C_6(4URN)
?
[Raw transfer]




XAM_B_6(4URM)
?
[Raw transfer]




NOV_A_4(4URN)
?
[Raw transfer]




B5U_B_5(4B6C)
GYRB_MYCSM
[Raw transfer]




XAM_D_8(4URM)
?
[Raw transfer]




1A1_C_9(4HYP)
GYRB_ECOLI
[Raw transfer]




XAM_A_5(4URM)
?
[Raw transfer]




RWX_B_8(4BAE)
GYRB_MYCSM
[Raw transfer]




1A1_A_5(4HYP)
GYRB_ECOLI
[Raw transfer]




NOV_B_2(1AJ6)
GYRB_ECOLI
[Raw transfer]




0RA_A_2(4EM7)
?
[Raw transfer]




NOV_B_4(1KIJ)
?
[Raw transfer]




19Y_A_3(4HXZ)
?
[Raw transfer]




1A1_B_7(4HYP)
GYRB_ECOLI
[Raw transfer]




4S4_A_2(4ZVI)
?
[Raw transfer]




1 PsiBlast_PDB 91.7770% -89 - C4 -4JUO - PARE_STRPN -
111 Fugue 69.6650% -61 - C3 -1EI1 8.4 GYRB_ECOLI
112 Fugue 69.2450% -58 - C3 -1EI1 8.4 GYRB_ECOLI
37 PsiBlast_CBE 68.6647% -63 - C3 -3ZKD - GYRB_MYCTU -
18 PsiBlast_PDB 68.5648% -60 - C3 -4WUD - GYRB_ECOLI -
58 PsiBlast_CBE 68.5048% -71 - C3 -4ZVI 5.7 ?
19 PsiBlast_PDB 68.4448% -60 - C3 -4XTJ - GYRB_ECOLI -
54 PsiBlast_CBE 68.3147% -62 - C3 -3ZKB - GYRB_MYCTU -
52 PsiBlast_CBE 68.2247% -64 - C3 -3ZKB - GYRB_MYCTU -
36 PsiBlast_CBE 68.1047% -66 - C3 -3ZKD - GYRB_MYCTU -
16 PsiBlast_PDB 68.0348% -60 - C3 -4WUB - GYRB_ECOLI -
40 PsiBlast_CBE 67.9247% -62 - C3 -3ZKD - GYRB_MYCTU -
53 PsiBlast_CBE 67.8847% -63 - C3 -3ZKB - GYRB_MYCTU -
17 PsiBlast_PDB 67.7148% -58 - C3 -4WUC - GYRB_ECOLI -
14 PsiBlast_PDB 67.5947% -63 - C3 -3ZKB - GYRB_MYCTU -
57 PsiBlast_CBE 67.4349% -60 - C3 -1EI1 - GYRB_ECOLI -
38 PsiBlast_CBE 67.4147% -62 - C3 -3ZKD - GYRB_MYCTU -
125 HHSearch 67.1047% -64 - C3 -1KIJ 6.5 ?
56 PsiBlast_CBE 67.0649% -59 - C3 -1EI1 - GYRB_ECOLI -
15 PsiBlast_PDB 66.8347% -62 - C3 -3ZKD - GYRB_MYCTU -
59 PsiBlast_CBE 66.6245% -59 - C3 -1KIJ 7.5 ?
60 PsiBlast_CBE 66.1045% -64 - C3 -1KIJ 6.4 ?
126 HHSearch 63.7336% -61 - C3 -1S16 9.8 PARE_ECOLI
88 PsiBlast_CBE 63.6735% -58 - C3 -1S16 9.8 PARE_ECOLI
83 PsiBlast_CBE 63.5538% -63 - C3 -4HYM 6.0 ?
82 PsiBlast_CBE 63.4038% -68 - C3 -4KQV 6.9 ?
87 PsiBlast_CBE 62.8635% -58 - C3 -1S16 10.3 PARE_ECOLI
85 PsiBlast_CBE 62.5638% -67 - C3 -4HXZ 5.1 ?
61 PsiBlast_CBE 55.3568% -72 - C3 -5BOD 5.5 ?
62 PsiBlast_CBE 55.3468% -71 - C3 -4MOT 5.4 ?
66 PsiBlast_CBE 54.8268% -70 - C3 -4EM7 5.2 ?
64 PsiBlast_CBE 54.7668% -68 - C3 -4MB9 4.7 ?
65 PsiBlast_CBE 54.4268% -69 - C3 -4LPB 6.2 ?
63 PsiBlast_CBE 53.7968% -68 - C3 -4MBC 5.0 ?
107 PsiBlast_CBE 53.0954% -60 - C3 -3G7E 6.5 GYRB_ECOLI
106 PsiBlast_CBE 52.0159% -56 - C3 -4URM 9.3 ?
67 PsiBlast_CBE 51.9869% -64 - C3 -4URN 4.8 ?
105 PsiBlast_CBE 51.9359% -59 - C3 -4URM 9.8 ?
91 PsiBlast_CBE 51.8653% -63 - C3 -1AJ6 5.5 GYRB_ECOLI
95 PsiBlast_CBE 51.6454% -65 - C3 -4HYP 6.8 GYRB_ECOLI
98 PsiBlast_CBE 51.3854% -66 - C3 -4HYP 7.2 GYRB_ECOLI
90 PsiBlast_CBE 50.8953% -57 - C3 -4DUH 6.3 GYRB_ECOLI
96 PsiBlast_CBE 50.8654% -64 - C3 -4HYP 6.8 GYRB_ECOLI
69 PsiBlast_CBE 50.7969% -67 - C3 -4URN 4.8 ?
89 PsiBlast_CBE 50.4953% -61 - C3 -4DUH 7.0 GYRB_ECOLI
94 PsiBlast_CBE 50.2654% -60 - C3 -4KFG 7.1 GYRB_ECOLI
97 PsiBlast_CBE 50.0454% -64 - C3 -4HYP 6.7 GYRB_ECOLI
93 PsiBlast_CBE 49.9854% -60 - C3 -4KFG 7.5 GYRB_ECOLI
80 PsiBlast_CBE 49.6559% -68 - C3 -4BAE 7.6 GYRB_MYCSM
101 PsiBlast_CBE 49.2059% -57 - C3 -4URO 6.5 GYRB_STAAU
100 PsiBlast_CBE 49.0559% -58 - C3 -4URO 5.9 GYRB_STAAU
68 PsiBlast_CBE 49.0169% -58 - C3 -4URN 4.9 ?
84 PsiBlast_CBE 48.1538% -71 - C3 -4HY1 7.3 ?
103 PsiBlast_CBE 48.1359% -55 - C3 -4URM 8.6 ?
99 PsiBlast_CBE 48.1259% -68 - C3 -4URO 5.7 GYRB_STAAU
134 HHSearch 47.9846% -64 * C3 *3FV5 5.5 PARE_ECOLI
104 PsiBlast_CBE 47.5659% -59 - C3 -4URM 8.4 ?
81 PsiBlast_CBE 47.5338% -67 - C3 -4KQV 7.2 ?
102 PsiBlast_CBE 46.8659% -59 - C3 -4URO 6.3 GYRB_STAAU
92 PsiBlast_CBE 43.7752% -63 - C3 -4B6C 6.1 GYRB_MYCSM
117 Fugue 41.0145% -54 - C3 -1KIJ 6.4 ?
115 Fugue 40.6445% -39 - C3 -1EI1 Error GYRB_ECOLI