@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1287: (2016-03-23 )
LSNPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPPHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIKKKYKTARRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMPNEQKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPHRFIGITLADNNDHLFIETNTDQIVEIDVANLRITDRYSNGSFVLDETMEGEPTSIWLAIPEIKDTSDAKEE

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_E_5(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAE)
PARC_STRPN
[Raw transfer]
-
CHAIN_H_8(4KOE)
PARC_STRPN
[Raw transfer]
-
CHAIN_H_8(4KPE)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3LTN)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAF)
PARC_STRPN
[Raw transfer]
-
SM8_A_5(2Y3P)
GYRA_ECOLI
[Raw transfer]



GOL_B_8(3ILW)
GYRA_MYCTU
[Raw transfer]



GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



SM8_B_8(2Y3P)
GYRA_ECOLI
[Raw transfer]



NACID_H_8(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3K9F)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3KSA)
PARC_STRPN
[Raw transfer]
-
CHAIN_H_8(4KPF)
PARC_STRPN
[Raw transfer]
-
MFX_H_10(3FOF)
PARC_STRPN
[Raw transfer]



MPD_B_5(3IFZ)
GYRA_MYCTU
[Raw transfer]



MPD_A_3(3IFZ)
GYRA_MYCTU
[Raw transfer]



NACID_F_6(3RAE)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3RAF)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3FOE)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3K9F)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3FOF)
PARC_STRPN
[Raw transfer]
-
CHAIN_F_6(4KPE)
PARC_STRPN
[Raw transfer]
-
NACID_G_5(4I3H)
?
[Raw transfer]
-
NACID_F_6(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
CHAIN_F_6(4KPF)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3LTN)
PARC_STRPN
[Raw transfer]
-
CHAIN_F_6(4KOE)
PARC_STRPN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_G_5(4I3H)
?
[Raw transfer]
-
NACID_F_6(3KSA)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
8 PsiBlast_PDB 92.1965% -62 - C2 -3RAF 4.5 PARC_STRPN
11 PsiBlast_PDB 92.1765% -64 - C2 -4KOE 4.7 PARC_STRPN
31 PsiBlast_CBE 92.1065% -70 - C2 -4I3H 6.0 ?
9 PsiBlast_PDB 91.8365% -64 - C2 -3RAD 4.8 PARC_STRPN
14 PsiBlast_PDB 91.8165% -66 - C2 -4I3H 4.0 ?
10 PsiBlast_PDB 91.6565% -62 - C2 -3RAE 3.7 PARC_STRPN
22 PsiBlast_CBE 91.5765% -62 - C2 -4KPE 2.9 PARC_STRPN
26 PsiBlast_CBE 91.5665% -64 - C2 -3RAD 4.0 PARC_STRPN
25 PsiBlast_CBE 91.3665% -63 - C2 -3RAE 3.1 PARC_STRPN
7 PsiBlast_PDB 91.3565% -62 - C2 -3LTN 4.0 PARC_STRPN
21 PsiBlast_CBE 91.3465% -65 - C2 -4KPF 4.4 PARC_STRPN
24 PsiBlast_CBE 91.2665% -64 - C2 -3RAF 4.5 PARC_STRPN
12 PsiBlast_PDB 91.1765% -65 - C2 -4KPE 3.2 PARC_STRPN
4 PsiBlast_PDB 91.1065% -61 - C2 -3K9F 4.6 PARC_STRPN
13 PsiBlast_PDB 91.0665% -68 - C2 -4KPF 4.7 PARC_STRPN
27 PsiBlast_CBE 91.0065% -63 - C2 -3LTN 3.7 PARC_STRPN
23 PsiBlast_CBE 90.9565% -63 - C2 -4KOE 4.8 PARC_STRPN
30 PsiBlast_CBE 90.9165% -61 - C2 -3K9F 4.1 PARC_STRPN
6 PsiBlast_PDB 90.8865% -68 - C2 -3KSB 4.3 PARC_STRPN
28 PsiBlast_CBE 90.7165% -67 - C2 -3KSB 3.1 PARC_STRPN
29 PsiBlast_CBE 90.6065% -65 - C2 -3KSA 4.3 PARC_STRPN
5 PsiBlast_PDB 90.5165% -66 - C2 -3KSA 4.9 PARC_STRPN
38 PsiBlast_CBE 84.5844% -59 * C2 *2Y3P 3.6 GYRA_ECOLI (first)
36 PsiBlast_CBE 84.4649% -58 - C2 -2XCR 4.9 GYRA_STAAN (first)
18 PsiBlast_PDB 84.4044% -62 - C2 -2Y3P 2.8 GYRA_ECOLI (first)
16 PsiBlast_PDB 83.9549% -60 - C2 -2XCR 4.2 GYRA_STAAN (first)
34 PsiBlast_CBE 83.4249% -61 - C2 -2XCR 3.9 GYRA_STAAN (first)
35 PsiBlast_CBE 83.2449% -57 - C2 -2XCR 2.5 GYRA_STAAN (first)
40 PsiBlast_CBE 82.8545% -57 - C2 -3IFZ 3.5 GYRA_MYCTU
3 PsiBlast_PDB 82.7365% -66 - C2 -3FOF 3.3 PARC_STRPN
2 PsiBlast_PDB 81.8565% -65 - C2 -3FOE 4.0 PARC_STRPN
39 PsiBlast_CBE 81.5545% -55 - C2 -3IFZ 3.0 GYRA_MYCTU
41 PsiBlast_CBE 81.5446% -60 - C2 -3ILW 2.2 GYRA_MYCTU
42 PsiBlast_CBE 81.0046% -59 - C2 -3ILW 2.7 GYRA_MYCTU
61 HHSearch 80.9546% -59 - C2 -3ILW 2.7 GYRA_MYCTU