@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1293: (2016-03-23 )
MVQLFSAFDRETIERNLQEEKFDLVIVGGGITGAGIALDATSRGMSVALVEMGDFASGTSSRSTKLVHGGLRYLQQFEIKEVADLGKERAIVYENGPHVTTPEWMMLPFHKGGNMGKTTASFGIRLYDYLAGVKKNERRKILSAKETLAKNPFVKKDGLKGSGYYVEYRTDDARLTIEVMKKAVELGANAINYTKAEHFLYDDNKQVVGVTVTDRLSGKAYDIKGHRVINAAGPWVDKVRKLDYATNNKHLRLTKGIHLVIDKQKFPMEQAVYFDTPDGRMVFAIPRDKKVYVGTTDTVYDEAVINPKALESDHNYVIKAINYMFPDVHITEKDIESSWAGVRPLIYEEGKDPSEISRKDEVWFSESGLITMAGGKLTGYRKMAEKLLDDVSKTLAKETGKKYKTVQTKHLPISGGDIGGSEQLEAFLSKKAKEGNNRFGWTLEEGREMAKRFGSNIDQLFTYAQEHKEQNETTLPNSLYAELRYSIQHEAVTTPIDFLLRRTGYLLFDMPYLLEWKDAVVDEMAKQFHWSDDVKQTYIEELNIQINDAREPADWHDR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_2(3DA1)
?
[Raw transfer]



FAD_A_3(2RGH)
?
[Raw transfer]



FAD_A_3(2RGH)
?
[Raw transfer]



FAD_A_2(3DA1)
?
[Raw transfer]



FAD_A_11(2R4J)
GLPD_ECOLI
[Raw transfer]



FAD_A_20(2R46)
GLPD_ECOLI
[Raw transfer]



FAD_A_3(2RGO)
?
[Raw transfer]



FAD_B_4(2RGO)
?
[Raw transfer]



FAD_A_18(2R45)
GLPD_ECOLI
[Raw transfer]



FAD_A_15(2QCU)
GLPD_ECOLI
[Raw transfer]



FAD_A_14(2R4E)
GLPD_ECOLI
[Raw transfer]



13P_A_16(2R4E)
GLPD_ECOLI
[Raw transfer]
1 PsiBlast_PDB 96.0252% -68 - C2 -3DA1 12.6 ?
103 HHSearch 95.3653% -69 - C2 -3DA1 12.6 ?
104 HHSearch 94.3842% -57 - C2 -2RGH 14.3 ?
2 PsiBlast_PDB 91.4142% -52 - C2 -2RGH 14.3 ?
3 PsiBlast_PDB 91.3840% -58 - C2 -2RGO 12.9 ?
21 PsiBlast_CBE 84.0140% -61 - C2 -2RGO 13.5 ?
5 PsiBlast_PDB 62.0130% -34 - C2 -2R45 11.7 GLPD_ECOLI
8 PsiBlast_PDB 61.2730% -31 - C2 -2R4J 10.5 GLPD_ECOLI
7 PsiBlast_PDB 60.6930% -32 - C2 -2R4E 9.1 GLPD_ECOLI
4 PsiBlast_PDB 60.4030% -29 - C2 -2QCU 10.0 GLPD_ECOLI
6 PsiBlast_PDB 58.9130% -30 - C2 -2R46 12.9 GLPD_ECOLI
105 HHSearch 53.0319% -55 - C2 -1RYI - GLOX_BACSU -
109 HHSearch 47.5015% -42 - C2 -3DME - ? -
106 HHSearch 46.5617% -38 - C2 -1Y56 - ? -
117 HHSearch 46.5513% -46 - C2 -2UZZ - MTOX_ECOLI -
108 HHSearch 44.7314% -33 - C2 -1PJ5 - DMGO_ARTGO -
125 Fugue 44.4717% -34 - C2 -3DME - ? -
9 PsiBlast_PDB 44.0623% -39 - C3 -4X9M - Y051_MYCPN -
111 HHSearch 43.7013% -38 - C2 -3DJE - ? -
119 HHSearch 43.5815% -44 - C2 -2OLN - ? -