@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1294: (2016-03-23 )
LSKIPVIVIVGPTAVGKTSLSIELAKKLDGEIISGDSMQVYRGLDIGTAKITPEEMDEIKHYLIDVTDPSEPFTAAKFQTETRKWIETIHQAGKLPIIVGGTGLYIQSVFYDYDFGNVSEDKAYRAELEQLNKTLLWQMLEQQDPESAAQIHENNKRRVIRALEVMHLTGKPFSEYQVHNVLNDTYKPLFLGLDLDRALLYERINQRVNLMFEEGLVTEAKKLYDQHLVDVPAVCGIGYKELFPYFEGKSSLEEAKELIQKNSRHFAKRQLTWFRNRMEIDWIQAGVSTTEAEALNKAETFLSVK

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DPO_A_3(3CRQ)
MIAA_PSEAE
[Raw transfer]



PPV_B_20(3EPK)
MOD5_YEAST
[Raw transfer]



PPV_A_10(3EPH)
MOD5_YEAST
[Raw transfer]



PPV_A_10(3EPH)
MOD5_YEAST
[Raw transfer]



DPO_A_4(3CRR)
MIAA_PSEAE
[Raw transfer]



PPV_B_17(3EPH)
MOD5_YEAST
[Raw transfer]



DST_B_6(2ZXU)
MIAA_ECOLI
[Raw transfer]



DMA_B_10(3EPL)
MOD5_YEAST
[Raw transfer]



DMA_A_6(3EPL)
MOD5_YEAST
[Raw transfer]



DST_A_2(2ZE6)
IPTZ_AGRFC
[Raw transfer]
6 PsiBlast_PDB 84.4436% -86 - C3 -3EPH - MOD5_YEAST -
26 PsiBlast_CBE 83.5036% -86 - C3 -3EPH 2.7 MOD5_YEAST
24 PsiBlast_CBE 83.2536% -87 - C3 -3EPK 2.8 MOD5_YEAST
25 PsiBlast_CBE 83.2236% -85 - C3 -3EPJ - MOD5_YEAST -
8 PsiBlast_PDB 82.9136% -85 - C3 -3EPK - MOD5_YEAST -
23 PsiBlast_CBE 82.8636% -82 - C3 -3EPL 3.6 MOD5_YEAST
64 Fugue 82.4234% -85 - C3 -3EPH 3.9 MOD5_YEAST
48 HHSearch 82.2735% -89 * C3 *3EPH 3.9 MOD5_YEAST
7 PsiBlast_PDB 81.6736% -83 - C3 -3EPJ - MOD5_YEAST -
9 PsiBlast_PDB 81.6436% -79 - C3 -3EPL 2.2 MOD5_YEAST
21 PsiBlast_CBE 80.7336% -85 - C3 -3FOZ - MIAA_ECOLI -
5 PsiBlast_PDB 80.4436% -86 - C3 -2ZXU - MIAA_ECOLI -
4 PsiBlast_PDB 79.7736% -84 - C3 -3FOZ - MIAA_ECOLI -
10 PsiBlast_PDB 79.0736% -87 - C3 -2ZM5 - MIAA_ECOLI -
1 PsiBlast_PDB 78.8651%-103 - C3 -2QGN - MIAA_BACHD -
47 HHSearch 78.4234% -71 - C3 -3FOZ - MIAA_ECOLI -
22 PsiBlast_CBE 77.6136% -84 - C3 -2ZXU 3.7 MIAA_ECOLI
46 HHSearch 73.5034% -79 - C3 -3CRM - MIAA_PSEAE -
13 PsiBlast_PDB 73.2134% -84 - C3 -3CRR 4.2 MIAA_PSEAE
49 HHSearch 72.9532% -86 - C3 -3A8T - IPT_HUMLU -
12 PsiBlast_PDB 72.3234% -83 - C3 -3CRQ 3.3 MIAA_PSEAE