@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1322: (2016-03-23 )
MSTELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKEAVEQVFDSRLEISMEEAHKLNPVYQPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAERGIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLTKVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEEVDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQATTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNGVEAPEVEEAESETFTEDEE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_D_2(2ATW)
NUSA_MYCTU
[Raw transfer]

-

NACID_B_1(2ATW)
NUSA_MYCTU
[Raw transfer]

-

NACID_B_1(2ASB)
NUSA_MYCTU
[Raw transfer]

-

NACID_B_1(2ASB)
NUSA_MYCTU
[Raw transfer]

-

21 HHSearch 92.4147% -73 - C6 -1HH2 - ? -
43 Fugue 91.5446% -73 - C6 -1HH2 - ? -
1 PsiBlast_PDB 91.2947% -75 - C6 -1HH2 - ? -
3 PsiBlast_PDB 83.5439% -92 - C6 -4MTN - ? -
20 PsiBlast_CBE 79.6848% -84 - C6 -2ATW 19.5 NUSA_MYCTU
23 HHSearch 78.0449% -80 - C6 -2ASB 19.8 NUSA_MYCTU
4 PsiBlast_PDB 77.9948% -82 - C6 -2ASB 19.8 NUSA_MYCTU
5 PsiBlast_PDB 76.7648% -79 - C6 -2ATW 20.1 NUSA_MYCTU
2 PsiBlast_PDB 72.5947% -14 - C6 -1L2F - ? -
6 PsiBlast_PDB 51.1234% -39 - C6 -2KWP - NUSA_ECOLI -
24 HHSearch 50.7334% -40 - C6 -2KWP - NUSA_ECOLI -
32 HHSearch 49.7621% -71 - C6 -2A19 - IF2A_YEAST -
41 HHSearch 43.7820% -42 - C6 -1KL9 - IF2A_HUMAN -
39 HHSearch 42.8512% -42 - C6 -1Y14 - RPB7_YEAST -
29 HHSearch 42.5919% -48 - C6 -2K4K - GS13_BACSU -
48 Fugue 42.0919% 1 - C1 -4L8N - ? -
37 HHSearch 41.7715% -13 * C6 *2CQO - NO40_HUMAN -
31 HHSearch 41.6318% -42 - C6 -2K52 - -
27 HHSearch 41.4613% -44 - C6 -2B8K - RPB7_YEAST -
28 HHSearch 40.3820% -20 - C6 -1JJG - ? -