@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1328: (2016-03-23 )
MNGIIPLWKERGMTSHDCVYKLRKILHTKKVGHTGTLDPEVEGVLPICIGRATKLAEYVTDEGKVYVAEITLGKSTTTEDATGETVNTKELAEISAAELQAALTKLTGKITQIPPMFSAVKVNGKKLYEYARAGIEVERPSRQVDIYSLIRLDGDTALNQSNPTFQLEIACGKGTYIRTLAVMIGELLGYPAHMSKLERTRSGFFKKEDCLTLTEIDEMMQASDSSFLYPLEKGIESMAKLVIEEEVYAKVLNGGLLPTSLFAEVENEPRAALIFKDKLTAIYKPHPEKKDLWKPEKVIELNQA

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

URA_A_2(1KSK)
RSUA_ECOLI
[Raw transfer]




BU1_A_4(1VIO)
RSUA_HAEIN
[Raw transfer]




NACID_C_1(1R3E)
TRUB_THEMA
[Raw transfer]

-

NACID_C_1(1R3E)
TRUB_THEMA
[Raw transfer]

-

NACID_C_1(1R3E)
TRUB_THEMA
[Raw transfer]

-

NACID_B_1(1K8W)
TRUB_ECOLI
[Raw transfer]

-

NACID_D_2(1ZE2)
TRUB_THEMA
[Raw transfer]

-

NACID_B_1(1K8W)
TRUB_ECOLI
[Raw transfer]

-

NACID_B_1(1K8W)
TRUB_ECOLI
[Raw transfer]

-

NACID_B_1(2AB4)
TRUB_THEMA
[Raw transfer]

-

NACID_C_1(1ZE2)
TRUB_THEMA
[Raw transfer]

-

NACID_E_5(3LWV)
TRUB_PYRFU
[Raw transfer]

-

NACID_B_1(1ZL3)
TRUB_ECOLI
[Raw transfer]

-

NACID_E_5(3LWR)
TRUB_PYRFU
[Raw transfer]

-

27 HHSearch 94.5835% -78 - C3 -1K8W 13.7 TRUB_ECOLI
47 Fugue 92.1634% -73 - C3 -1K8W 14.3 TRUB_ECOLI
32 HHSearch 91.8135%-124 - C3 -2AUS - TRUB_PYRAB -
9 PsiBlast_PDB 90.6230%-124 - C3 -2AUS - TRUB_PYRAB -
48 Fugue 90.4831% -82 - C3 -1R3E 14.3 TRUB_THEMA
30 HHSearch 90.2033%-115 - C3 -2APO - TRUB_METJA -
31 HHSearch 90.1732%-106 - C3 -3U28 - CBF5_YEAST -
28 HHSearch 89.6033% -88 * C3 *1R3E 14.1 TRUB_THEMA
14 PsiBlast_PDB 88.1329%-118 - C3 -3LWP - TRUB_PYRFU -
13 PsiBlast_PDB 88.0829%-116 - C3 -3LWO - TRUB_PYRFU -
17 PsiBlast_PDB 87.3829%-117 - C3 -3LWV 3.4 TRUB_PYRFU
16 PsiBlast_PDB 86.7229%-117 - C3 -3LWR 2.2 TRUB_PYRFU
11 PsiBlast_PDB 86.4429%-113 - C3 -3HAX - TRUB_PYRFU -
15 PsiBlast_PDB 86.3329%-114 - C3 -3LWQ - TRUB_PYRFU -
18 PsiBlast_PDB 86.1530%-114 - C3 -2EY4 - TRUB_PYRFU -
10 PsiBlast_PDB 86.1329%-117 - C3 -2HVY - TRUB_PYRFU -
19 PsiBlast_PDB 86.0229%-117 - C3 -3MQK - TRUB_PYRFU -
20 PsiBlast_PDB 85.5429%-113 - C3 -3HJW - TRUB_PYRFU -
7 PsiBlast_PDB 85.1034% -77 - C3 -1ZE2 12.7 TRUB_THEMA
12 PsiBlast_PDB 85.0529%-107 - C3 -3HAY - TRUB_PYRFU -
2 PsiBlast_PDB 84.5042% -80 - C3 -1K8W 14.4 TRUB_ECOLI
3 PsiBlast_PDB 84.2442% -80 - C3 -1ZL3 11.6 TRUB_ECOLI
5 PsiBlast_PDB 84.1034% -76 - C3 -1R3E 14.2 TRUB_THEMA
8 PsiBlast_PDB 83.6234% -76 - C3 -2AB4 13.5 TRUB_THEMA
24 PsiBlast_CBE 67.0734% -64 - C3 -1ZE2 9.3 TRUB_THEMA