@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1367: (2016-03-24 )
MNKGHRHIIIRELITSNEIDTQEDLVELLLERDVKVTQATVSRDIKELHLVKVPTQTGGYKYSLPADNSFNPHQKLKRALIDCFIGIDNVQFMIILKVMPGNGNSVGALIDNLDWPEKAGTICGDDTCLIICRSEENAKTLTDRFIDML

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ARG_B_4(2P5M)
ARGR_BACSU
[Raw transfer]




ARG_B_4(2P5M)
ARGR_BACSU
[Raw transfer]




ARG_B_4(2P5M)
ARGR_BACSU
[Raw transfer]




ARG_B_4(2P5M)
ARGR_BACSU
[Raw transfer]




ARG_E_9(1B4B)
ARGR_GEOSE
[Raw transfer]




ARG_F_11(1B4B)

[Raw transfer]




GGB_B_16(3LAP)
ARGR_MYCTU
[Raw transfer]




GGB_F_26(3LAP)
ARGR_MYCTU
[Raw transfer]




GGB_F_26(3LAP)
ARGR_MYCTU
[Raw transfer]




ARG_F_18(3LAJ)
ARGR_MYCTU
[Raw transfer]




ARG_C_15(3FHZ)
ARGR_MYCTU
[Raw transfer]




ARG_F_11(1B4B)
ARGR_GEOSE
[Raw transfer]




ARG_F_11(1B4B)
ARGR_GEOSE
[Raw transfer]




ARG_F_11(1B4B)
ARGR_GEOSE
[Raw transfer]




1 PsiBlast_PDB 93.4165%-138 - C3 -1F9N - ARGR_BACSU -
28 HHSearch 89.8159%-137 - C3 -1B4A - ARGR_GEOSE -
2 PsiBlast_PDB 89.8159%-137 - C3 -1B4A - ARGR_GEOSE -
30 HHSearch 73.5431%-128 - C3 -3LAP 3.3 ARGR_MYCTU
7 PsiBlast_PDB 67.7230%-108 - C3 -3ERE - ARGR_MYCTU -
8 PsiBlast_PDB 67.5930%-130 - C3 -3FHZ 2.8 ARGR_MYCTU
22 PsiBlast_CBE 67.1357%-140 - C3 -2P5M 3.7 ARGR_BACSU
3 PsiBlast_PDB 66.7557%-146 - C3 -2P5M 3.6 ARGR_BACSU
31 HHSearch 66.3556%-155 - C3 -2P5M 3.4 ARGR_BACSU
21 PsiBlast_CBE 65.7357%-147 - C3 -2P5M 3.5 ARGR_BACSU
9 PsiBlast_PDB 65.0530%-116 - C3 -3LAJ 2.8 ARGR_MYCTU
10 PsiBlast_PDB 63.4830%-114 - C3 -3LAP 3.3 ARGR_MYCTU
49 Fugue 61.8350%-173 - C3 -1B4B 2.5 ARGR_GEOSE
48 Fugue 60.5667%-107 - C3 -1B4A - ARGR_GEOSE -
26 PsiBlast_CBE 58.4050%-167 - C3 -1B4B 2.5
25 PsiBlast_CBE 57.4775%-107 - C3 -2P5L - ARGR_BACSU -
6 PsiBlast_PDB 57.3050%-161 - C3 -1B4B 2.5 ARGR_GEOSE
33 HHSearch 56.5750%-160 - C3 -1B4B 2.5 ARGR_GEOSE
27 PsiBlast_CBE 56.5050%-159 - C3 -1B4B 2.6 ARGR_GEOSE
5 PsiBlast_PDB 56.4575%-111 - C3 -2P5L - ARGR_BACSU -